source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr5	4652889	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	5	A21,B13,B56,B8,C17
lof_cds	Chr5	4653040	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	92	A10,A14,A20,A21,A4,A6,A7,B105,B106,B110,B111,B112,B118,B12,B121,B124,B126,B13,B131,B133,B134,B137,B15,B16,B18,B22,B25,B28,B29,B3,B30,B36,B37,B38,B39,B40,B41,B45,B47,B5,B56,B58,B59,B64,B70,B74,B77,B82,B86,B87,B88,B89,B90,B91,B92,B95,B99,C1,C11,C13,C14,C17,C20,C21,C26,C27,C28,C35,C40,C44,C50,C51,C55,C59,C60,C63,C64,C71,C72,C73,C74,C76,C77,C79,C80,C81,C84,C87,C9,D1,D2,D6
lof_cds	Chr5	4653053	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B32
typical_cds_rare	Chr5	4653053	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B32
typical_cds_rare	Chr5	4653104	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C46,C82
typical_cds_rare	Chr5	4653150	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	3	C25,C32,C68
typical_cds_rare	Chr5	4653196	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	C2
typical_cds_rare	Chr5	4653198	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	B22,B91
typical_cds_rare	Chr5	4653201	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	4	A25,B102,B54,C73
lof_cds	Chr5	4653225	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	106	A14,A15,A18,A21,A24,A4,A5,A6,A8,A9,B101,B106,B112,B118,B12,B120,B121,B124,B125,B126,B127,B13,B130,B135,B137,B139,B140,B15,B16,B18,B21,B22,B28,B29,B3,B32,B33,B35,B36,B38,B39,B41,B44,B45,B47,B5,B50,B51,B52,B56,B58,B59,B62,B70,B74,B75,B8,B84,B85,B87,B88,B89,B90,B92,B95,B96,B97,C1,C13,C16,C17,C18,C19,C20,C21,C22,C24,C25,C27,C28,C31,C32,C35,C47,C50,C51,C53,C55,C59,C60,C62,C64,C66,C68,C70,C71,C72,C73,C76,C77,C79,C81,C87,D1,D2,D8
lof_cds	Chr5	4653228	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	168	A10,A11,A14,A15,A16,A18,A2,A20,A21,A24,A4,A5,A6,A7,A8,A9,B100,B101,B102,B105,B106,B108,B110,B111,B112,B118,B12,B120,B121,B123,B124,B125,B126,B127,B13,B130,B133,B135,B137,B138,B139,B14,B140,B15,B16,B18,B20,B21,B22,B24,B25,B27,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B40,B41,B43,B44,B45,B47,B49,B5,B50,B51,B52,B54,B55,B56,B58,B59,B60,B61,B62,B64,B70,B72,B74,B75,B77,B8,B82,B83,B84,B85,B86,B87,B88,B89,B90,B91,B92,B95,B96,B97,B98,B99,C1,C11,C13,C14,C16,C17,C18,C19,C20,C21,C22,C23,C24,C25,C26,C27,C28,C31,C32,C33,C35,C36,C38,C40,C41,C44,C46,C47,C48,C49,C50,C51,C53,C55,C59,C60,C62,C63,C64,C66,C68,C69,C70,C71,C72,C73,C74,C75,C76,C77,C79,C80,C81,C82,C84,C86,C87,C9,D1,D2,D3,D6,D8
typical_cds_rare	Chr5	4653262	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B104
typical_cds_rare	Chr5	4653263	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B46
lof_cds	Chr5	4653344	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	23	A21,A4,A7,B102,B16,B24,B41,B45,B70,B75,B89,B97,C1,C13,C16,C46,C53,C55,C66,C79,C80,C81,D1
lof_cds	Chr5	4653503	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	66	A1,A10,A11,A15,A16,A20,A23,A3,B102,B107,B111,B113,B114,B118,B128,B130,B131,B132,B17,B2,B26,B27,B30,B33,B37,B42,B53,B54,B55,B57,B60,B61,B65,B66,B68,B72,B73,B77,B80,B82,B83,B86,B99,C10,C14,C2,C26,C30,C33,C38,C4,C48,C49,C54,C58,C59,C65,C69,C73,C74,C8,C84,C9,D10,D4,D6
lof_cds	Chr5	4653505	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	66	A1,A10,A11,A15,A16,A20,A23,A3,B102,B107,B111,B113,B114,B118,B128,B130,B131,B132,B17,B2,B26,B27,B30,B33,B37,B42,B53,B54,B55,B57,B60,B61,B65,B66,B68,B72,B73,B77,B80,B82,B83,B86,B99,C10,C14,C2,C26,C30,C33,C38,C4,C48,C49,C54,C58,C59,C65,C69,C73,C74,C8,C84,C9,D10,D4,D6
typical_cds_rare	Chr5	4653541	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	A18,B135
typical_cds_rare	Chr5	4653578	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B7
typical_cds_rare	Chr5	4653585	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	B4,C4
typical_cds_rare	Chr5	4653771	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	C16
lof_cds	Chr5	4653789	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	156	A11,A14,A15,A16,A18,A2,A20,A21,A24,A4,A5,A6,A7,A8,A9,B100,B101,B105,B106,B108,B110,B111,B112,B115,B118,B119,B12,B120,B121,B123,B124,B125,B126,B127,B128,B13,B130,B131,B134,B136,B137,B138,B139,B140,B15,B16,B18,B19,B22,B24,B25,B27,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B47,B48,B5,B50,B51,B54,B56,B58,B59,B60,B61,B62,B63,B64,B70,B72,B74,B76,B77,B8,B82,B85,B86,B87,B88,B89,B90,B92,B95,B96,C1,C11,C13,C14,C16,C17,C19,C20,C21,C22,C25,C26,C27,C28,C31,C32,C35,C38,C40,C41,C46,C47,C49,C50,C51,C53,C54,C55,C57,C59,C60,C61,C63,C64,C66,C68,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C80,C81,C82,C84,C86,C87,C9,D1,D2,D3,D6,D8
lof_cds	Chr5	4653800	G	GCA	INDEL	2bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	104	A14,A18,A2,A20,A21,A24,A4,A5,A6,A8,A9,B101,B105,B106,B112,B115,B12,B120,B121,B124,B125,B126,B127,B13,B134,B135,B137,B138,B139,B140,B15,B16,B18,B22,B25,B29,B3,B32,B35,B36,B38,B39,B41,B44,B45,B48,B5,B50,B56,B58,B59,B62,B63,B64,B70,B74,B76,B8,B87,B88,B90,B92,B95,B96,B97,C1,C13,C16,C17,C18,C19,C20,C22,C25,C27,C28,C31,C32,C35,C41,C50,C51,C53,C55,C57,C60,C61,C64,C66,C68,C70,C71,C72,C73,C76,C77,C78,C79,C80,C81,C87,D1,D2,D8
lof_cds	Chr5	4653801	G	GAA	INDEL	2bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	104	A14,A18,A2,A20,A21,A24,A4,A5,A6,A8,A9,B101,B105,B106,B112,B115,B12,B120,B121,B124,B125,B126,B127,B13,B134,B135,B137,B138,B139,B140,B15,B16,B18,B22,B25,B29,B3,B32,B35,B36,B38,B39,B41,B44,B45,B48,B5,B50,B56,B58,B59,B62,B63,B64,B70,B74,B76,B8,B87,B88,B90,B92,B95,B96,B97,C1,C13,C16,C17,C18,C19,C20,C22,C25,C27,C28,C31,C32,C35,C41,C50,C51,C53,C55,C57,C60,C61,C64,C66,C68,C70,C71,C72,C73,C76,C77,C78,C79,C80,C81,C87,D1,D2,D8
typical_cds_rare	Chr5	4653854	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	C8
lof_cds	Chr5	4653885	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	96	A1,A10,A11,A15,A16,A2,A20,A22,A23,A3,A7,B102,B103,B107,B108,B111,B113,B114,B123,B128,B131,B132,B133,B136,B138,B14,B17,B19,B2,B20,B24,B26,B27,B30,B33,B37,B40,B42,B43,B49,B51,B53,B54,B55,B60,B61,B64,B66,B68,B73,B77,B80,B82,B83,B84,B86,B98,B99,C10,C11,C14,C2,C23,C26,C29,C30,C33,C36,C37,C38,C4,C40,C41,C42,C44,C47,C48,C49,C5,C58,C59,C63,C67,C69,C7,C73,C74,C75,C84,C86,C9,D10,D11,D3,D4,D6
typical_cds_rare	Chr5	4653945	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B49
lof_cds	Chr5	4654025	CGA	C	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	D10
typical_cds_rare	Chr5	4654025	CGA	C	INDEL	2bp_deletion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	D10
typical_cds_rare	Chr5	4654048	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B118
typical_cds_rare	Chr5	4654095	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	3	B14,B68,C84
lof_cds	Chr5	4654106	CAG	C	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	75	A11,A18,A2,A21,A22,A23,A25,A3,A4,A6,B102,B105,B106,B107,B108,B110,B112,B113,B119,B124,B126,B128,B130,B139,B14,B15,B2,B21,B26,B30,B33,B36,B38,B42,B44,B53,B55,B64,B66,B68,B73,B77,B80,B83,B87,B88,B99,C1,C2,C22,C23,C29,C30,C31,C33,C36,C41,C44,C5,C54,C55,C57,C63,C65,C68,C71,C74,C75,C76,C8,C81,C84,C86,D10,D11
typical_cds_rare	Chr5	4654133	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	3	C35,C44,D10
typical_cds_rare	Chr5	4654226	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	3	C16,C47,C74
typical_cds_rare	Chr5	4654235	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	B22,B91
typical_cds_rare	Chr5	4654246	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B104
typical_cds_rare	Chr5	4654309	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	3	A23,B19,C54
typical_cds_rare	Chr5	4654330	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	5	B114,B91,C10,C36,C84
typical_cds_rare	Chr5	4654336	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	4	A24,C4,C42,C72
lof_cds	Chr5	4654422	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654422	A	AT	INDEL	1bp_insertion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
lof_cds	Chr5	4654434	G	GA	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654434	G	GA	INDEL	1bp_insertion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654486	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
lof_cds	Chr5	4654487	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654487	A	AC	INDEL	1bp_insertion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
lof_cds	Chr5	4654488	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654488	T	TG	INDEL	1bp_insertion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
lof_cds	Chr5	4654490	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654490	GGT	G	INDEL	2bp_deletion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
lof_cds	Chr5	4654500	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654500	GA	G	INDEL	1bp_deletion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
lof_cds	Chr5	4654509	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654509	T	TG	INDEL	1bp_insertion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	2	C58,D10
typical_cds_rare	Chr5	4654564	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	C60
typical_cds_rare	Chr5	4654593	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B104
typical_cds_rare	Chr5	4654609	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	C65
lof_cds	Chr5	4654698	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
typical_cds_rare	Chr5	4654698	T	TA	INDEL	1bp_insertion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
lof_cds	Chr5	4654702	CCA	C	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
typical_cds_rare	Chr5	4654702	CCA	C	INDEL	2bp_deletion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
lof_cds	Chr5	4654706	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
typical_cds_rare	Chr5	4654706	G	GGT	INDEL	2bp_insertion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
lof_cds	Chr5	4654712	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
typical_cds_rare	Chr5	4654712	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
lof_cds	Chr5	4654722	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
typical_cds_rare	Chr5	4654722	CAT	C	INDEL	2bp_deletion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
lof_cds	Chr5	4654734	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
typical_cds_rare	Chr5	4654734	GT	G	INDEL	1bp_deletion	CDS_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	1	B9
lof_cds	Chr5	4654809	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	15	A5,B103,B12,B131,B63,C15,C27,C28,C35,C36,C43,C47,C5,C54,C79
lof_cds	Chr5	4654813	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	15	A5,B103,B12,B131,B63,C15,C27,C28,C35,C36,C43,C47,C5,C54,C79
lof_cds	Chr5	4654915	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130985244	SmilChr05G000617	130985244	rna-XM_057908098.1	46	A18,A22,A24,B105,B109,B120,B121,B135,B139,B23,B28,B39,B49,B50,B56,B58,B6,B62,B63,B72,B76,B8,B83,B85,B9,B91,B95,B96,C15,C18,C25,C27,C28,C30,C32,C47,C53,C61,C63,C65,C68,C75,C86,C87,D2,D3