source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr5	54519826	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	82	A1,A13,A2,A21,A22,A6,A7,A8,B101,B104,B114,B119,B121,B122,B129,B135,B137,B140,B19,B23,B26,B27,B29,B34,B35,B38,B39,B4,B47,B48,B5,B52,B54,B57,B61,B63,B65,B67,B73,B76,B78,B79,B8,B82,B83,B86,B88,B89,B90,B91,B92,C12,C17,C18,C26,C29,C3,C30,C31,C36,C38,C39,C41,C44,C45,C50,C51,C52,C53,C56,C65,C72,C75,C78,C80,C84,C87,C9,D1,D11,D4,D5
typical_cds_rare	Chr5	54519832	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	D11
lof_cds	Chr5	54519874	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	80	A1,A13,A2,A21,A22,A6,A7,A8,B101,B104,B114,B119,B121,B122,B129,B134,B135,B137,B140,B19,B23,B25,B26,B27,B29,B34,B35,B38,B39,B4,B47,B48,B5,B52,B54,B57,B61,B63,B65,B67,B73,B76,B78,B79,B8,B82,B83,B86,B88,B89,B90,B91,C17,C18,C26,C29,C3,C30,C31,C36,C38,C41,C44,C45,C50,C52,C53,C56,C65,C72,C75,C78,C80,C84,C87,C9,D1,D11,D4,D5
lof_cds	Chr5	54519916	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	A24
typical_cds_rare	Chr5	54519916	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	A24
typical_cds_rare	Chr5	54519931	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	B15
typical_cds_rare	Chr5	54520703	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	2	B18,B64
lof_cds	Chr5	54520755	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	83	A1,A13,A2,A22,A6,A7,A8,B101,B104,B114,B119,B121,B122,B129,B134,B135,B137,B140,B19,B23,B25,B26,B27,B29,B34,B35,B38,B39,B47,B48,B52,B54,B57,B61,B63,B65,B73,B76,B78,B79,B8,B82,B83,B86,B88,B89,B90,B91,B92,C12,C17,C18,C26,C29,C3,C30,C31,C36,C38,C39,C41,C44,C45,C50,C51,C52,C53,C55,C56,C65,C70,C72,C75,C78,C80,C84,C86,C87,C9,D1,D11,D4,D5
typical_cds_rare	Chr5	54522030	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	5	A14,A24,B46,B50,D3
typical_cds_rare	Chr5	54522175	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	B101
typical_cds_rare	Chr5	54522185	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	2	B102,B85
typical_cds_rare	Chr5	54522187	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	C62
lof_cds	Chr5	54522220	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	83	A1,A13,A2,A21,A22,A6,A7,A8,B101,B104,B114,B119,B12,B121,B122,B129,B134,B135,B137,B140,B19,B23,B25,B26,B27,B29,B34,B35,B38,B39,B47,B48,B5,B52,B54,B57,B61,B63,B65,B67,B76,B78,B79,B8,B82,B83,B86,B88,B89,B90,B91,B92,C17,C18,C29,C3,C30,C31,C36,C38,C39,C41,C44,C45,C50,C51,C52,C53,C55,C56,C65,C70,C72,C75,C78,C80,C84,C86,C87,C9,D1,D4,D5
typical_cds_rare	Chr5	54522250	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	2	C65,C76
lof_cds	Chr5	54522373	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	85	A1,A13,A2,A21,A22,A6,A7,A8,B101,B104,B114,B119,B12,B121,B122,B129,B134,B135,B137,B140,B19,B23,B25,B26,B27,B29,B34,B35,B38,B39,B4,B47,B48,B5,B52,B54,B57,B61,B63,B65,B67,B73,B76,B78,B79,B8,B82,B83,B86,B88,B89,B90,B91,B92,C12,C17,C18,C26,C29,C3,C30,C31,C36,C38,C39,C41,C44,C45,C50,C51,C52,C53,C55,C56,C65,C70,C72,C75,C78,C86,C87,C9,D1,D4,D5
lof_cds	Chr5	54522533	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	63	A13,A2,A21,A6,A8,B114,B12,B121,B134,B137,B140,B19,B23,B29,B38,B39,B4,B47,B48,B54,B57,B63,B67,B73,B76,B79,B8,B82,B83,B86,B88,B89,B90,B91,B92,C12,C17,C18,C26,C29,C3,C30,C31,C36,C44,C45,C50,C51,C52,C53,C56,C65,C70,C72,C75,C78,C84,C87,C9,D1,D11,D4,D5
lof_cds	Chr5	54522552	C	CTA	INDEL	2bp_insertion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	55	A13,A2,A21,A6,A8,B101,B12,B121,B134,B137,B140,B19,B23,B38,B39,B4,B48,B57,B67,B73,B76,B79,B82,B83,B86,B88,B89,B90,B91,B92,C12,C17,C18,C26,C29,C3,C30,C36,C45,C50,C51,C52,C53,C56,C65,C70,C72,C75,C78,C87,C9,D1,D11,D4,D5
lof_cds	Chr5	54522586	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	2	C26,C72
typical_cds_rare	Chr5	54522586	T	TTC	INDEL	2bp_insertion	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	2	C26,C72
lof_cds	Chr5	54522626	GCA	G	INDEL	2bp_deletion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	22	A19,A9,B110,B123,B13,B27,B37,B45,B58,B64,B66,B71,B74,B93,C10,C44,C47,C59,C80,C82,D11,D7
lof_cds	Chr5	54522629	T	TTC	INDEL	2bp_insertion	frameshift_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	22	A19,A9,B110,B123,B13,B27,B37,B45,B58,B64,B66,B71,B74,B93,C10,C44,C47,C59,C80,C82,D11,D7
typical_cds_rare	Chr5	54522956	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	B23
typical_cds_rare	Chr5	54523439	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	B41
typical_cds_rare	Chr5	54524798	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	B33
typical_cds_rare	Chr5	54524855	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	1	C62
typical_cds_rare	Chr5	54526306	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	2	B120,D11
typical_cds_rare	Chr5	54526312	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	5	B130,B133,B19,C13,C52
typical_cds_rare	Chr5	54526343	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	5	B107,B128,B61,C49,D1
typical_cds_rare	Chr5	54527142	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025119	SmilChr05G004056	131025119	rna-XM_057954733.1	5	B5,B6,B8,C19,C67