source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr5	54559344	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B60,C30,C39
typical_cds_rare	Chr5	54559353	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	B15,C12,C32,C68
typical_cds_rare	Chr5	54559356	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B133,B60,C24,C30,C39
lof_cds	Chr5	54559382	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	13	A14,A9,B131,B133,B27,B40,B48,B60,C10,C3,C30,C46,C51
lof_cds	Chr5	54559389	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	110	A15,A20,A22,A4,A6,A8,B10,B103,B106,B108,B109,B11,B114,B117,B118,B119,B120,B123,B125,B129,B13,B131,B132,B133,B135,B137,B139,B16,B17,B22,B23,B27,B30,B33,B34,B42,B43,B46,B47,B50,B55,B56,B6,B60,B64,B66,B71,B73,B75,B76,B79,B8,B83,B84,B89,B91,B96,B97,B98,B99,C11,C13,C14,C15,C16,C17,C19,C2,C23,C24,C26,C27,C28,C3,C30,C32,C34,C35,C37,C38,C39,C4,C40,C41,C42,C45,C48,C49,C5,C50,C52,C55,C56,C6,C60,C62,C67,C68,C69,C72,C73,C75,C76,C77,C81,C82,C84,D2,D6,D9
lof_cds	Chr5	54559391	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	18	A14,A21,A9,B104,B131,B133,B27,B4,B40,B48,B60,B69,B86,C10,C3,C30,C46,C51
lof_cds	Chr5	54559422	TCC	T	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	21	A9,B104,B112,B133,B136,B26,B32,B4,B40,B48,B60,B69,B78,B86,C10,C30,C35,C46,C75,D10,D2
lof_cds	Chr5	54559427	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	21	A14,A9,B133,B136,B26,B32,B4,B40,B48,B60,B69,B78,B86,C1,C10,C30,C35,C46,C75,D10,D2
lof_cds	Chr5	54559429	A	AGT	INDEL	2bp_insertion	stop_gained,frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	23	A14,A9,B104,B112,B133,B136,B26,B32,B4,B40,B48,B60,B69,B78,B86,C1,C10,C30,C35,C46,C75,D10,D2
lof_cds	Chr5	54559432	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	23	A14,A9,B104,B112,B133,B136,B26,B4,B40,B48,B60,B69,B78,B86,C1,C10,C30,C35,C46,C51,C75,D10,D2
lof_cds	Chr5	54559433	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	24	A14,A9,B104,B112,B133,B136,B25,B26,B4,B40,B48,B60,B69,B78,B86,C1,C10,C30,C35,C46,C51,C75,D10,D2
lof_cds	Chr5	54559439	CCT	C	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	25	A14,A21,A9,B104,B112,B133,B136,B25,B26,B4,B40,B48,B60,B69,B78,B86,C1,C10,C30,C35,C46,C51,C75,D10,D2
typical_cds_rare	Chr5	54559482	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	2	B129,C36
typical_cds_rare	Chr5	54559490	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B132,B28,B68
lof_cds	Chr5	54559491	G	GAT	INDEL	2bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	37	A14,A21,A6,A9,B104,B112,B133,B19,B26,B36,B37,B4,B40,B48,B60,B63,B64,B69,B78,B80,B86,B87,C10,C15,C27,C28,C32,C35,C46,C51,C63,C68,C75,C78,D10,D2,D4
lof_cds	Chr5	54559493	CAA	C	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	B113,B19,B25,B79
typical_cds_rare	Chr5	54559493	CAA	C	INDEL	2bp_deletion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	B113,B19,B25,B79
lof_cds	Chr5	54559497	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	37	A14,A21,A6,A9,B104,B112,B133,B19,B26,B36,B37,B4,B40,B48,B60,B63,B64,B69,B78,B80,B86,B87,C10,C15,C27,C28,C32,C35,C46,C51,C63,C68,C75,C78,D10,D2,D4
lof_cds	Chr5	54559516	T	TCG	INDEL	2bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B113,B19,B25,B65,B79
typical_cds_rare	Chr5	54559516	T	TCG	INDEL	2bp_insertion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B113,B19,B25,B65,B79
typical_cds_rare	Chr5	54559523	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	C55
lof_cds	Chr5	54559524	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	C32
typical_cds_rare	Chr5	54559524	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	C32
lof_cds	Chr5	54559527	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B113,B19,B25,B65,B79
typical_cds_rare	Chr5	54559527	A	ATG	INDEL	2bp_insertion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B113,B19,B25,B65,B79
lof_cds	Chr5	54559529	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B113,B19,B25,B65,B79
typical_cds_rare	Chr5	54559529	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B113,B19,B25,B65,B79
lof_cds	Chr5	54559598	A	ATG	INDEL	2bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	14	A8,B104,B19,B4,B47,B48,B76,B79,B91,C3,C30,C40,D2,D7
lof_cds	Chr5	54559603	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	13	A8,B104,B19,B4,B48,B76,B79,B91,C3,C30,C40,D2,D7
typical_cds_rare	Chr5	54559631	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	B123
typical_cds_rare	Chr5	54559646	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	B47
typical_cds_rare	Chr5	54559657	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B113,B19,C40
typical_cds_rare	Chr5	54559663	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	B113,B19,C26,C40
lof_cds	Chr5	54559680	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B113,B19,C40
typical_cds_rare	Chr5	54559680	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B113,B19,C40
lof_cds	Chr5	54559682	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	20	A10,A23,A25,A8,B104,B112,B12,B120,B124,B19,B40,B47,B72,B76,B78,B79,B91,C3,C45,C59
lof_cds	Chr5	54559683	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B113,B19,C40
typical_cds_rare	Chr5	54559683	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B113,B19,C40
lof_cds	Chr5	54559684	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	19	A10,A23,A25,B104,B112,B12,B120,B124,B40,B47,B72,B76,B78,B79,B91,B93,C3,C45,C59
lof_cds	Chr5	54559708	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	6	B100,B47,C43,C56,D11,D7
lof_cds	Chr5	54559721	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	12	A23,A25,B112,B12,B124,B27,B47,B72,B76,B78,C3,C45
lof_cds	Chr5	54559728	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	8	A23,B12,B124,B27,B72,B76,B78,C45
lof_cds	Chr5	54559744	AC	A	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	7	A25,B112,B27,B47,B78,C3,C45
lof_cds	Chr5	54559747	T	TA	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	7	A25,B112,B27,B47,B78,C3,C45
lof_cds	Chr5	54559751	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	A25,B112,B47,C3
typical_cds_rare	Chr5	54559751	CA	C	INDEL	1bp_deletion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	A25,B112,B47,C3
lof_cds	Chr5	54559758	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	A25,B112,B19,B47,C3
typical_cds_rare	Chr5	54559758	CT	C	INDEL	1bp_deletion	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	A25,B112,B19,B47,C3
typical_cds_rare	Chr5	54559780	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	A25,B112,B27
lof_cds	Chr5	54559875	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	A7,B101,B108
typical_cds_rare	Chr5	54559875	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	A7,B101,B108
typical_cds_rare	Chr5	54559903	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	B8
typical_cds_rare	Chr5	54559930	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	B107
typical_cds_rare	Chr5	54559957	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	B86,B89,C75
typical_cds_rare	Chr5	54559972	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	D11
lof_cds	Chr5	54560008	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	25	A3,A4,B102,B118,B123,B129,B13,B19,B47,B54,B90,B92,C13,C26,C28,C36,C42,C47,C48,C6,C60,C7,C86,D1,D8
typical_cds_rare	Chr5	54560076	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	D11
typical_cds_rare	Chr5	54560086	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	A9,B61,D5
typical_cds_rare	Chr5	54560089	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	A9,B61,D5
typical_cds_rare	Chr5	54560101	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	A9,B61,D5
lof_cds	Chr5	54560166	GGT	G	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	31	A15,A25,B119,B128,B136,B18,B2,B21,B28,B32,B34,B35,B40,B42,B52,B66,B68,B74,B77,B78,B9,B98,C1,C3,C37,C45,C69,C70,C85,C87,D8
lof_cds	Chr5	54560170	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	34	A15,A25,B119,B128,B136,B18,B2,B21,B28,B32,B34,B35,B4,B40,B42,B52,B66,B68,B74,B77,B78,B83,B9,B98,C1,C3,C37,C45,C69,C70,C85,C87,D7,D8
typical_cds_rare	Chr5	54560204	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	3	A23,B39,B94
typical_cds_rare	Chr5	54560205	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	A19
lof_cds	Chr5	54560249	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	45	A10,A15,A9,B109,B128,B136,B18,B2,B21,B28,B32,B35,B40,B42,B43,B52,B66,B68,B74,B77,B83,B87,B88,B9,B94,B98,C1,C11,C15,C3,C36,C37,C45,C50,C55,C64,C66,C69,C70,C8,C83,C87,D4,D7,D8
lof_cds	Chr5	54560256	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	46	A10,A15,A9,B109,B128,B136,B18,B2,B21,B28,B32,B35,B40,B42,B43,B52,B66,B68,B74,B77,B83,B87,B88,B9,B93,B94,B98,C1,C11,C15,C3,C36,C37,C45,C50,C55,C64,C66,C69,C70,C8,C83,C87,D4,D7,D8
lof_cds	Chr5	54560276	A	AAC	INDEL	2bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	55	A10,A15,A9,B109,B119,B128,B132,B136,B18,B2,B21,B28,B32,B35,B39,B40,B42,B43,B52,B65,B66,B68,B77,B83,B87,B88,B9,B93,B94,B98,C1,C11,C15,C3,C36,C37,C45,C5,C50,C54,C55,C64,C66,C69,C70,C74,C8,C81,C83,C87,C9,D3,D4,D7,D8
lof_cds	Chr5	54560278	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	55	A10,A15,A9,B109,B119,B128,B132,B136,B18,B2,B21,B28,B32,B35,B39,B40,B42,B43,B52,B65,B66,B68,B77,B83,B87,B88,B9,B93,B94,B98,C1,C11,C15,C3,C36,C37,C45,C5,C50,C54,C55,C64,C66,C69,C70,C74,C8,C81,C83,C87,C9,D3,D4,D7,D8
lof_cds	Chr5	54560290	ACC	A	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	47	A10,A15,A9,B109,B128,B136,B2,B21,B28,B32,B34,B35,B40,B42,B43,B52,B65,B66,B68,B77,B83,B87,B88,B9,B93,B94,B98,C1,C11,C15,C3,C36,C37,C5,C50,C55,C64,C66,C69,C70,C8,C83,C87,C9,D4,D7,D8
typical_cds_rare	Chr5	54560305	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	2	A15,C55
lof_cds	Chr5	54560306	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	35	A10,A9,B109,B128,B132,B136,B32,B35,B40,B42,B43,B52,B65,B66,B68,B83,B9,B94,B98,C11,C15,C3,C36,C37,C50,C55,C64,C66,C69,C81,C83,C87,C9,D7,D8
typical_cds_rare	Chr5	54560360	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	A6,B34,C3,C39
typical_cds_rare	Chr5	54560400	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	B123
typical_cds_rare	Chr5	54560411	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	5	B128,B40,B66,C36,C50
typical_cds_rare	Chr5	54560417	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	4	B128,B66,C36,C50
typical_cds_rare	Chr5	54560452	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025124	SmilChr05G004061	131025124	rna-XM_057954743.1	1	D8