source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr5	55728119	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	70	A1,A13,A18,A22,A23,A7,A9,B100,B112,B113,B120,B123,B125,B130,B132,B135,B15,B16,B19,B25,B31,B35,B41,B5,B53,B54,B58,B59,B6,B65,B69,B70,B72,B73,B76,B85,B87,B88,B91,C10,C11,C17,C18,C22,C27,C31,C35,C36,C39,C41,C49,C5,C50,C54,C56,C64,C65,C66,C67,C69,C7,C70,C71,C74,C76,C80,C82,C85,D11,D7
typical_cds_rare	Chr5	55728145	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	A22,B76,C49
typical_cds_rare	Chr5	55728200	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	A18,C82,C85
typical_cds_rare	Chr5	55728224	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B87
typical_cds_rare	Chr5	55728242	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B35,B65,D11
typical_cds_rare	Chr5	55728260	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	D11
typical_cds_rare	Chr5	55728314	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B104,B41,B44
typical_cds_rare	Chr5	55728318	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B10,B66,B8
typical_cds_rare	Chr5	55728348	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B87
lof_cds	Chr5	55728405	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	6	A22,B35,B65,B76,C49,D11
typical_cds_rare	Chr5	55728408	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B104,B41,B44
typical_cds_rare	Chr5	55728420	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B3,D2
typical_cds_rare	Chr5	55728429	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	5	A18,A24,B107,B140,B82
typical_cds_rare	Chr5	55728430	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	4	B101,B104,B113,B132
typical_cds_rare	Chr5	55728431	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B104,B41
typical_cds_rare	Chr5	55728440	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B35,B65,D11
typical_cds_rare	Chr5	55728470	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	A22,B76,C49
typical_cds_rare	Chr5	55728484	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C75
typical_cds_rare	Chr5	55728488	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B35,D11
lof_cds	Chr5	55728547	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	7	B21,B53,B81,C25,C36,C55,C79
lof_cds	Chr5	55728549	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	7	B21,B53,B81,C25,C36,C55,C79
typical_cds_rare	Chr5	55728577	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B41,C10,C74
lof_cds	Chr5	55728585	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C79
typical_cds_rare	Chr5	55728585	GTC	G	INDEL	2bp_deletion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C79
lof_cds	Chr5	55728597	C	CGG	INDEL	2bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	6	B21,B53,B81,C25,C36,C55
lof_cds	Chr5	55728600	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	9	A7,B10,B134,B21,B53,B81,C25,C55,C79
lof_cds	Chr5	55728617	G	GCA	INDEL	2bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	7	A7,B10,B134,B21,B53,C36,C79
lof_cds	Chr5	55728621	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	5	B21,B53,C25,C36,C79
typical_cds_rare	Chr5	55728621	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	5	B21,B53,C25,C36,C79
lof_cds	Chr5	55728627	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	A7,B10,B134
typical_cds_rare	Chr5	55728627	GTT	G	INDEL	2bp_deletion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	A7,B10,B134
typical_cds_rare	Chr5	55728639	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B113,B132
lof_cds	Chr5	55728641	G	GGT	INDEL	2bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	83	A1,A13,A18,A19,A23,A7,A9,B10,B100,B104,B110,B112,B113,B114,B120,B123,B125,B126,B130,B132,B133,B134,B135,B15,B16,B21,B25,B31,B35,B41,B5,B53,B54,B57,B58,B59,B6,B63,B65,B69,B72,B82,B85,B86,B88,B91,B99,C10,C11,C16,C17,C18,C22,C25,C27,C30,C31,C35,C36,C41,C49,C5,C54,C56,C63,C64,C65,C66,C67,C69,C7,C70,C71,C74,C76,C79,C80,C82,C85,C86,D11,D7,D8
typical_cds_rare	Chr5	55728657	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	5	A7,B10,B134,C36,C79
typical_cds_rare	Chr5	55728667	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B104,B113,B132
typical_cds_rare	Chr5	55728746	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	A24,B107,B140
lof_cds	Chr5	55728750	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	26	A20,A25,B101,B103,B133,B19,B29,B30,B75,B78,B88,B90,B92,B95,C26,C32,C35,C50,C52,C58,C64,C65,C66,C68,C7,C70
lof_cds	Chr5	55728821	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B121,C4
typical_cds_rare	Chr5	55728821	A	AG	INDEL	1bp_insertion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B121,C4
typical_cds_rare	Chr5	55728822	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C8
typical_cds_rare	Chr5	55728866	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B93,C2
lof_cds	Chr5	55728887	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	8	B131,B53,B56,B96,C63,C67,C82,C85
typical_cds_rare	Chr5	55728914	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	4	A18,B107,B140,B82
typical_cds_rare	Chr5	55728934	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B87
typical_cds_rare	Chr5	55728965	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B35,B65,C39
typical_cds_rare	Chr5	55728976	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B41,C10,C74
typical_cds_rare	Chr5	55728986	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B41,C10,C74
typical_cds_rare	Chr5	55729017	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B35,B65
typical_cds_rare	Chr5	55729042	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	A18
typical_cds_rare	Chr5	55729043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	5	B119,B34,B67,C23,C44
typical_cds_rare	Chr5	55729057	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B35,B46,B65
lof_cds	Chr5	55729073	C	CT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	90	A11,A15,A18,A22,A24,A25,A4,A7,B106,B107,B111,B117,B118,B120,B124,B125,B13,B132,B134,B135,B138,B139,B14,B140,B18,B19,B22,B23,B25,B26,B27,B29,B38,B39,B49,B51,B52,B59,B6,B71,B73,B74,B75,B78,B81,B82,B89,B9,B93,B94,B97,C1,C13,C14,C2,C20,C25,C26,C27,C29,C32,C34,C39,C40,C41,C5,C53,C55,C58,C59,C6,C62,C63,C64,C66,C68,C70,C75,C78,C79,C8,C84,C85,C86,C87,D1,D4,D5,D6,D9
lof_cds	Chr5	55729078	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B35,B65
typical_cds_rare	Chr5	55729078	ACG	A	INDEL	2bp_deletion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B35,B65
lof_cds	Chr5	55729087	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	25	A1,A11,A23,B103,B105,B136,B139,B2,B22,B32,B47,B76,B80,B91,B98,B99,C21,C22,C48,C51,C56,C57,C73,C81,C82
typical_cds_rare	Chr5	55729115	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	4	B119,B46,B55,B67
typical_cds_rare	Chr5	55729116	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B119,B55,B67
typical_cds_rare	Chr5	55729131	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B119,D6
lof_cds	Chr5	55729144	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	164	A1,A10,A11,A13,A14,A18,A19,A2,A20,A22,A23,A25,A5,A6,A7,A9,B1,B100,B101,B102,B104,B106,B109,B11,B111,B112,B113,B115,B117,B118,B119,B12,B120,B122,B123,B125,B126,B129,B13,B130,B131,B132,B133,B135,B138,B14,B140,B15,B16,B20,B22,B23,B24,B25,B27,B3,B30,B31,B32,B33,B34,B35,B38,B39,B4,B41,B44,B45,B47,B49,B5,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B64,B65,B68,B69,B71,B72,B73,B74,B75,B76,B78,B8,B80,B82,B85,B87,B88,B89,B90,B91,B98,B99,C1,C10,C11,C14,C15,C17,C18,C20,C22,C23,C25,C26,C27,C29,C3,C31,C32,C34,C35,C36,C37,C38,C4,C41,C43,C44,C45,C46,C5,C51,C53,C54,C55,C56,C61,C62,C63,C64,C65,C66,C67,C68,C7,C70,C72,C73,C74,C76,C77,C78,C80,C82,C85,C86,D10,D11,D2,D8,D9
typical_cds_rare	Chr5	55729171	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B10,B66,B8
typical_cds_rare	Chr5	55729175	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	4	A24,B107,B140,B82
typical_cds_rare	Chr5	55729181	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B31,B55
lof_cds	Chr5	55729184	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B31,B55
typical_cds_rare	Chr5	55729184	GA	G	INDEL	1bp_deletion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B31,B55
lof_cds	Chr5	55729187	C	CT	INDEL	1bp_insertion	stop_gained,frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B31,B55
typical_cds_rare	Chr5	55729187	C	CT	INDEL	1bp_insertion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B31,B55
typical_cds_rare	Chr5	55729201	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C8
typical_cds_rare	Chr5	55729206	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	A24,B82
lof_cds	Chr5	55729210	CT	C	INDEL	1bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	20	A6,B112,B118,B119,B124,B130,B24,B41,B61,B76,B95,C11,C38,C43,C46,C50,C60,C63,C69,C70
typical_cds_rare	Chr5	55729215	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B125,C64,C66
typical_cds_rare	Chr5	55729259	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B104,B113
lof_cds	Chr5	55729291	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C8
typical_cds_rare	Chr5	55729291	AG	A	INDEL	1bp_deletion	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C8
typical_cds_rare	Chr5	55729292	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B125,C64
typical_cds_rare	Chr5	55729305	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B125,C64
typical_cds_rare	Chr5	55729344	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B65
typical_cds_rare	Chr5	55729361	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	4	B104,B113,B132,B87
typical_cds_rare	Chr5	55729440	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C68
typical_cds_rare	Chr5	55729459	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	A22,C49
typical_cds_rare	Chr5	55729500	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B140
typical_cds_rare	Chr5	55729835	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B66
typical_cds_rare	Chr5	55729848	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B22,B71,B90
typical_cds_rare	Chr5	55729889	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	C82,D1
typical_cds_rare	Chr5	55729890	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	3	B33,B45,C41
typical_cds_rare	Chr5	55729891	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	4	B113,B126,B22,D2
typical_cds_rare	Chr5	55729916	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	2	B22,D2
typical_cds_rare	Chr5	55729958	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	4	B138,B5,C29,C45
typical_cds_rare	Chr5	55730023	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	C45
lof_cds	Chr5	55730312	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B87
typical_cds_rare	Chr5	55730312	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026150	SmilChr05G004182	131026150	rna-XM_057955919.1	1	B87