source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr5	55776222	CTG	C	INDEL	2bp_deletion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1	3	B100,C82,D7
typical_cds_rare	Chr5	55776222	CTG	C	INDEL	2bp_deletion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1	3	B100,C82,D7
typical_cds_rare	Chr5	55776291	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1	1	D3
lof_cds	Chr5	55776306	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1	127	A11,A14,A16,A20,A21,A22,A24,A3,A5,A6,A8,B1,B10,B100,B102,B104,B105,B108,B11,B110,B111,B114,B121,B125,B126,B129,B133,B134,B135,B137,B139,B17,B22,B25,B26,B27,B28,B3,B34,B37,B40,B41,B47,B49,B5,B52,B53,B54,B57,B58,B59,B62,B65,B68,B7,B71,B73,B74,B76,B78,B79,B80,B83,B84,B85,B89,B90,B92,B93,B95,B99,C11,C13,C14,C15,C16,C18,C19,C2,C21,C22,C23,C24,C25,C26,C27,C29,C30,C31,C33,C34,C37,C38,C40,C41,C45,C47,C50,C52,C53,C56,C57,C6,C61,C62,C63,C64,C65,C67,C69,C70,C74,C75,C76,C77,C79,C8,C82,C83,C84,C9,D1,D2,D3,D4,D7,D8
typical_cds_rare	Chr5	55776415	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B83,C41
typical_cds_rare	Chr5	55776545	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	C45,D10
typical_cds_rare	Chr5	55776630	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B13
typical_cds_rare	Chr5	55776632	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B45,C45
lof_cds	Chr5	55776650	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B83
typical_cds_rare	Chr5	55776650	T	TAC	INDEL	2bp_insertion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B83
typical_cds_rare	Chr5	55776658	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	A16,B90,B92,C15,D3
typical_cds_rare	Chr5	55776666	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B24,C29
typical_cds_rare	Chr5	55776729	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B10,B94
typical_cds_rare	Chr5	55776755	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B62,D7
typical_cds_rare	Chr5	55776756	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B2
typical_cds_rare	Chr5	55776896	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B132,B28
typical_cds_rare	Chr5	55776998	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	A2,A5
typical_cds_rare	Chr5	55777011	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	D11
typical_cds_rare	Chr5	55777028	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	C26
typical_cds_rare	Chr5	55777140	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B62,C3,D7
typical_cds_rare	Chr5	55777142	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B100,B30
typical_cds_rare	Chr5	55777216	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B10,B126,C37
typical_cds_rare	Chr5	55777295	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	A7,B77,C43,C64,C66
lof_cds	Chr5	55777303	A	AGC	INDEL	2bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B120,B13,C5,C75,C8
typical_cds_rare	Chr5	55777303	A	AGC	INDEL	2bp_insertion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B120,B13,C5,C75,C8
lof_cds	Chr5	55777308	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B120,B13,C5,C75,C8
typical_cds_rare	Chr5	55777308	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B120,B13,C5,C75,C8
typical_cds_rare	Chr5	55777311	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	D3
typical_cds_rare	Chr5	55777359	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B72
typical_cds_rare	Chr5	55777492	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	4	B120,C5,C75,C8
typical_cds_rare	Chr5	55777497	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B13
lof_cds	Chr5	55777500	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B127
typical_cds_rare	Chr5	55777500	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B127
lof_cds	Chr5	55777533	C	CAT	INDEL	2bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	C10,C48
typical_cds_rare	Chr5	55777533	C	CAT	INDEL	2bp_insertion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	C10,C48
typical_cds_rare	Chr5	55777590	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B99,C26
lof_cds	Chr5	55777608	T	TAC	INDEL	2bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B115,B117,B126,B46,C2
typical_cds_rare	Chr5	55777608	T	TAC	INDEL	2bp_insertion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B115,B117,B126,B46,C2
typical_cds_rare	Chr5	55777623	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	4	B120,C5,C75,C8
typical_cds_rare	Chr5	55777640	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B115,B117,B126,B46,C2
lof_cds	Chr5	55777653	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	27	A14,A15,B100,B112,B124,B136,B24,B28,B55,B56,B57,B61,B66,B67,B76,B82,C1,C20,C52,C67,C81,C83,C86,C87,D6,D7,D9
typical_cds_rare	Chr5	55777685	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B104,B2,D3
typical_cds_rare	Chr5	55777715	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B115,C2
typical_cds_rare	Chr5	55777721	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B2,B24,C29
lof_cds	Chr5	55777723	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B115,C2
typical_cds_rare	Chr5	55777723	TC	T	INDEL	1bp_deletion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B115,C2
lof_cds	Chr5	55777732	A	AC	INDEL	1bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	56	A14,A16,A20,A24,A6,B104,B105,B11,B110,B111,B114,B125,B17,B2,B21,B22,B40,B52,B53,B58,B59,B68,B74,B78,B84,B86,B89,B90,B92,B93,C11,C14,C16,C21,C24,C27,C29,C30,C33,C34,C36,C40,C45,C50,C52,C57,C61,C63,C65,C67,C69,C75,C8,C84,D1,D3
typical_cds_rare	Chr5	55777783	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	C74
typical_cds_rare	Chr5	55777814	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B120,B13,C5,C75,C8
typical_cds_rare	Chr5	55777838	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	C26
typical_cds_rare	Chr5	55777839	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B112,B132,B28
typical_cds_rare	Chr5	55777860	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	4	B104,B15,C20,C42
typical_cds_rare	Chr5	55777872	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B104,C77
typical_cds_rare	Chr5	55777892	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	B120,B13,C5,C75,C8
typical_cds_rare	Chr5	55777899	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	C45
typical_cds_rare	Chr5	55777925	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	D10
typical_cds_rare	Chr5	55777941	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B112,B132,B28
typical_cds_rare	Chr5	55778035	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	C5,C8
typical_cds_rare	Chr5	55778037	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	C5,C8
typical_cds_rare	Chr5	55778041	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	4	A16,B129,B92,C67
typical_cds_rare	Chr5	55778043	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	C5,C8
typical_cds_rare	Chr5	55778070	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	B104
typical_cds_rare	Chr5	55778085	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	A16,B105,B110,B74,C36
typical_cds_rare	Chr5	55778120	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B110,B74,C36
typical_cds_rare	Chr5	55778237	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B112,B132,B28
typical_cds_rare	Chr5	55778250	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	A18,B94,D10
typical_cds_rare	Chr5	55778254	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	4	A25,B1,B71,C38
typical_cds_rare	Chr5	55778256	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	1	C60
typical_cds_rare	Chr5	55778273	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B81,C77
lof_cds	Chr5	55778311	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	59	A15,A16,A23,B108,B113,B119,B123,B131,B132,B136,B140,B15,B16,B17,B20,B22,B26,B29,B3,B37,B38,B39,B48,B50,B56,B6,B61,B63,B72,B77,B78,B81,B88,B94,B96,B97,C12,C15,C18,C20,C22,C23,C28,C3,C38,C4,C40,C44,C46,C50,C59,C7,C72,C73,D11,D4,D5,D6,D8
typical_cds_rare	Chr5	55778334	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B24,C59
typical_cds_rare	Chr5	55778381	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	3	B100,B30,B36
typical_cds_rare	Chr5	55778397	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	4	B120,B13,C5,C75
typical_cds_rare	Chr5	55778450	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B108,D4
typical_cds_rare	Chr5	55778505	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	5	A16,B138,C11,C69,D7
lof_cds	Chr5	55778528	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	57	A10,A16,A23,A7,B1,B105,B106,B107,B109,B122,B124,B131,B132,B134,B136,B138,B139,B140,B35,B36,B38,B4,B44,B48,B51,B54,B61,B64,B75,B77,B78,B83,B87,B88,C1,C10,C13,C18,C20,C24,C28,C32,C35,C36,C39,C4,C5,C54,C58,C60,C63,C66,C69,C72,C78,D5,D9
lof_cds	Chr5	55778530	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	53	A10,A23,A7,B1,B105,B106,B107,B109,B122,B131,B132,B134,B136,B139,B140,B35,B36,B38,B4,B44,B48,B51,B54,B61,B64,B75,B77,B78,B83,B87,B88,C1,C10,C13,C18,C20,C24,C28,C32,C35,C36,C39,C4,C5,C54,C58,C60,C63,C66,C72,C78,D5,D9
lof_cds	Chr5	55778532	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	A16,B138
typical_cds_rare	Chr5	55778532	A	ATC	INDEL	2bp_insertion	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	A16,B138
typical_cds_rare	Chr5	55778544	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131025240	SmilChr05G004186	131025240	rna-XM_057954908.1,rna-XM_057954909.1	2	B1,C19