source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr5	56985605	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	1	B28
typical_cds_rare	Chr5	56985636	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	2	B98,C15
typical_cds_rare	Chr5	56985655	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	B66,B93,C10,C15,C46
lof_cds	Chr5	56985673	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	101	A1,A13,A14,A2,A20,A23,A25,A3,A5,A9,B1,B10,B103,B105,B110,B112,B118,B119,B125,B127,B128,B13,B131,B133,B135,B138,B139,B14,B18,B2,B23,B24,B26,B28,B3,B31,B32,B33,B38,B45,B46,B48,B49,B5,B51,B52,B56,B58,B59,B60,B7,B74,B79,B80,B84,B85,B86,B87,B89,B91,B92,B93,B96,B99,C1,C10,C11,C15,C16,C19,C2,C20,C23,C24,C33,C34,C38,C39,C4,C47,C53,C55,C6,C60,C61,C62,C64,C65,C66,C67,C70,C75,C78,C81,C84,C9,D11,D2,D6,D7,D9
lof_cds	Chr5	56985675	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	104	A1,A13,A14,A2,A20,A23,A25,A3,A5,A9,B1,B10,B102,B103,B105,B110,B112,B118,B119,B125,B127,B128,B13,B131,B133,B135,B136,B138,B139,B14,B18,B2,B23,B24,B26,B28,B3,B31,B32,B33,B38,B45,B46,B48,B49,B5,B51,B52,B56,B58,B59,B60,B7,B74,B79,B80,B84,B85,B86,B87,B89,B91,B92,B93,B96,B99,C1,C10,C11,C15,C16,C19,C2,C20,C23,C24,C33,C34,C38,C39,C4,C46,C47,C53,C55,C6,C60,C61,C62,C64,C65,C66,C67,C70,C75,C78,C81,C84,C9,D11,D2,D6,D7,D9
typical_cds_rare	Chr5	56985719	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	4	A6,C2,C73,C8
lof_cds	Chr5	56985739	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	11	A10,B10,B138,B2,B3,B56,B70,B80,B96,C25,D1
lof_cds	Chr5	56985743	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	A6,B10,C2,C73,D6
typical_cds_rare	Chr5	56985743	G	GT	INDEL	1bp_insertion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	A6,B10,C2,C73,D6
lof_cds	Chr5	56985759	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	B125,B139,B31
typical_cds_rare	Chr5	56985759	GT	G	INDEL	1bp_deletion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	B125,B139,B31
typical_cds_rare	Chr5	56985761	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	4	A19,B131,B93,C15
lof_cds	Chr5	56985763	CTA	C	INDEL	2bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	4	A25,B100,B14,B86
typical_cds_rare	Chr5	56985763	CTA	C	INDEL	2bp_deletion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	4	A25,B100,B14,B86
typical_cds_rare	Chr5	56985767	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	B132,B15,B27,B48,C19
lof_cds	Chr5	56985773	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	7	B106,B119,B134,B55,C28,C43,C59
typical_cds_rare	Chr5	56985777	AG	*	INDEL	1bp_deletion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	1	B62
lof_cds	Chr5	56985786	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	7	B105,B112,B22,B4,B49,C5,D8
lof_cds	Chr5	56985796	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	24	A25,A3,B100,B111,B131,B136,B14,B29,B32,B45,B46,B48,B85,B95,B96,C10,C12,C19,C33,C39,C4,C46,C60,C65
lof_cds	Chr5	56985799	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	21	A25,B100,B111,B131,B136,B14,B29,B32,B45,B46,B48,B85,B96,C10,C19,C33,C39,C4,C46,C60,C65
lof_cds	Chr5	56985811	AGG	A	INDEL	2bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	20	A25,B111,B131,B136,B14,B29,B32,B45,B46,B85,B95,B96,C10,C12,C19,C33,C39,C4,C60,C65
lof_cds	Chr5	56985819	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	9	B109,B129,B132,B48,B64,B68,C68,D10,D9
typical_cds_rare	Chr5	56985831	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	B126,C8,C81
typical_cds_rare	Chr5	56985841	TCG	*	INDEL	2bp_deletion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	1	B35
lof_cds	Chr5	56985847	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	B126,B28,C52,C8,C81
typical_cds_rare	Chr5	56985847	T	TC	INDEL	1bp_insertion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	B126,B28,C52,C8,C81
lof_cds	Chr5	56985865	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	A8,B127,B27,B92,C61
typical_cds_rare	Chr5	56985865	T	TG	INDEL	1bp_insertion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	A8,B127,B27,B92,C61
typical_cds_rare	Chr5	56985867	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	1	B65
lof_cds	Chr5	56985869	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	B126,C8,C81
typical_cds_rare	Chr5	56985869	TG	T	INDEL	1bp_deletion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	B126,C8,C81
typical_cds_rare	Chr5	56985873	TAC	*	INDEL	2bp_deletion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	A22,B63,C33
lof_cds	Chr5	56985882	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	2	A22,C33
typical_cds_rare	Chr5	56985882	G	GA	INDEL	1bp_insertion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	2	A22,C33
lof_cds	Chr5	56985896	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	A15,B28,C49
typical_cds_rare	Chr5	56985896	C	CA	INDEL	1bp_insertion	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	A15,B28,C49
lof_cds	Chr5	56985903	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	39	A14,A2,A25,A4,A8,B100,B104,B109,B111,B126,B128,B129,B132,B138,B140,B23,B30,B35,B48,B51,B54,B60,B64,B68,B69,B73,C25,C29,C30,C32,C43,C49,C61,C66,C68,C81,D10,D3,D9
lof_cds	Chr5	56985906	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	44	A14,A15,A2,A20,A25,A4,A8,B100,B104,B109,B111,B126,B128,B129,B132,B138,B140,B23,B28,B30,B35,B48,B51,B54,B60,B64,B68,B69,B73,B86,C25,C29,C30,C32,C43,C49,C61,C66,C68,C81,D1,D10,D3,D9
lof_cds	Chr5	56985907	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	A23,B91,D11
typical_cds_rare	Chr5	56985907	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	A23,B91,D11
lof_cds	Chr5	56985914	GTA	G	INDEL	2bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	54	A1,A14,A15,A2,A20,A25,A4,A5,A8,A9,B104,B109,B110,B111,B126,B128,B129,B132,B134,B138,B14,B140,B23,B28,B35,B48,B51,B54,B56,B60,B64,B68,B69,B73,B74,B86,B99,C25,C27,C29,C30,C32,C43,C49,C52,C66,C68,C77,C81,C84,D1,D10,D3,D9
typical_cds_rare	Chr5	56985919	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	4	A22,B65,C13,C21
typical_cds_rare	Chr5	56985932	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	5	A22,B3,B51,C13,C21
lof_cds	Chr5	56985944	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	34	A1,A14,A15,A2,A20,A4,B104,B110,B111,B112,B126,B128,B131,B134,B135,B140,B26,B28,B51,B54,B73,B86,B99,C25,C27,C30,C43,C49,C62,C66,C7,C81,C84,D2
lof_cds	Chr5	56985961	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	19	B111,B126,B129,B132,B138,B14,B48,B64,B68,B69,B77,B93,C29,C31,C4,C68,D1,D10,D9
lof_cds	Chr5	56985966	GGA	G	INDEL	2bp_deletion	frameshift_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	15	A2,A20,B110,B112,B126,B131,B26,B51,B54,C27,C30,C43,C66,C77,C81
typical_cds_rare	Chr5	56985973	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	2	B138,C29
typical_cds_rare	Chr5	56985982	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	B32,C66,C9
typical_cds_rare	Chr5	56985986	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	2	B138,B17
typical_cds_rare	Chr5	56986001	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	C11,C17,C66
typical_cds_rare	Chr5	56986011	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	1	A6
typical_cds_rare	Chr5	56986019	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	3	B19,B59,C11
typical_cds_rare	Chr5	56986026	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	1	B17
typical_cds_rare	Chr5	56986034	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	2	C64,C9
typical_cds_rare	Chr5	56986042	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC131026174	SmilChr05G004330	131026174	rna-XM_057955945.1	1	C10