source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr7	3796409	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	4	A4,B100,B97,C38
typical_cds_rare	Chr7	3796426	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	C83
typical_cds_rare	Chr7	3796453	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B106,B41,C10
typical_cds_rare	Chr7	3796481	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B106,B41,C10
typical_cds_rare	Chr7	3796530	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	C32,C68
lof_cds	Chr7	3796606	CTG	C	INDEL	2bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	9	B102,B119,B124,B136,B18,B61,B85,C12,D10
lof_cds	Chr7	3796611	T	TTA	INDEL	2bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	9	B102,B119,B124,B136,B18,B61,B85,C12,D10
typical_cds_rare	Chr7	3796651	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	5	B119,B124,B136,B18,B85
typical_cds_rare	Chr7	3797015	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	4	A4,B100,B97,C38
lof_cds	Chr7	3797051	A	ACG	INDEL	2bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B31,B95
typical_cds_rare	Chr7	3797051	A	ACG	INDEL	2bp_insertion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B31,B95
lof_cds	Chr7	3797064	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	79	A1,A14,A15,A18,A20,A24,B101,B106,B108,B112,B114,B118,B124,B128,B129,B130,B131,B134,B135,B137,B15,B19,B20,B22,B26,B28,B3,B32,B34,B36,B4,B41,B49,B54,B64,B68,B73,B79,B8,B80,B82,B84,B88,B89,B9,B94,C10,C13,C15,C17,C2,C21,C25,C3,C32,C34,C35,C36,C37,C41,C42,C43,C53,C54,C56,C58,C61,C68,C70,C71,C72,C77,C79,C81,C9,D1,D2,D6,D7
lof_cds	Chr7	3797066	GTT	G	INDEL	2bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	121	A1,A13,A14,A18,A2,A20,A22,A3,A4,A5,B1,B100,B105,B106,B107,B109,B11,B110,B111,B112,B113,B117,B118,B12,B120,B123,B127,B128,B130,B136,B138,B139,B14,B140,B15,B16,B17,B18,B2,B21,B23,B28,B29,B37,B38,B39,B40,B43,B44,B45,B47,B48,B50,B55,B57,B59,B63,B66,B67,B68,B69,B7,B70,B71,B72,B75,B76,B79,B81,B82,B83,B84,B86,B89,B9,B97,B98,C1,C15,C16,C20,C23,C26,C28,C29,C30,C31,C33,C36,C38,C4,C43,C44,C46,C48,C5,C51,C55,C56,C57,C59,C6,C62,C63,C65,C67,C72,C76,C79,C8,C81,C82,C83,C84,C87,C9,D1,D2,D3,D4,D6
lof_cds	Chr7	3797070	C	CCG	INDEL	2bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	118	A1,A13,A14,A18,A2,A20,A22,A3,A4,A5,B10,B100,B104,B105,B106,B107,B109,B11,B110,B111,B112,B113,B117,B118,B12,B120,B123,B127,B128,B130,B138,B139,B140,B15,B16,B17,B18,B2,B21,B23,B28,B29,B37,B38,B39,B40,B42,B43,B44,B45,B47,B48,B50,B55,B57,B59,B63,B66,B67,B68,B69,B70,B71,B72,B75,B76,B79,B81,B82,B83,B84,B86,B89,B9,B97,B98,C14,C15,C16,C2,C20,C21,C23,C28,C29,C30,C31,C33,C36,C38,C4,C43,C47,C48,C5,C51,C56,C59,C6,C62,C65,C67,C72,C73,C76,C79,C8,C81,C82,C83,C84,C87,C9,D1,D2,D3,D4,D6
lof_cds	Chr7	3797073	CTT	C	INDEL	2bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	124	A1,A13,A14,A18,A2,A20,A22,A3,A4,A5,B10,B100,B104,B105,B106,B107,B109,B11,B110,B111,B112,B113,B117,B118,B12,B120,B123,B128,B130,B136,B138,B139,B140,B15,B16,B17,B18,B2,B21,B23,B28,B29,B37,B38,B39,B40,B42,B43,B44,B45,B47,B48,B50,B55,B57,B59,B63,B66,B67,B68,B69,B7,B70,B71,B72,B75,B76,B79,B81,B82,B83,B84,B86,B89,B9,B97,B98,C1,C14,C15,C16,C2,C20,C21,C23,C26,C28,C29,C30,C31,C33,C36,C38,C4,C43,C47,C48,C5,C51,C55,C56,C57,C59,C6,C62,C63,C65,C67,C72,C73,C76,C79,C8,C81,C82,C83,C84,C87,C9,D1,D2,D3,D4,D6
lof_cds	Chr7	3797077	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	120	A1,A13,A14,A18,A2,A20,A22,A3,A4,A5,B10,B100,B104,B105,B106,B107,B109,B11,B110,B111,B112,B113,B117,B118,B12,B120,B123,B128,B130,B138,B139,B140,B15,B16,B17,B18,B2,B21,B23,B28,B29,B37,B38,B39,B40,B42,B43,B44,B45,B47,B48,B50,B55,B57,B59,B63,B66,B67,B68,B69,B70,B71,B72,B75,B76,B79,B81,B82,B83,B84,B86,B89,B9,B97,B98,C14,C15,C16,C2,C20,C21,C23,C28,C29,C30,C31,C33,C34,C36,C38,C4,C43,C44,C47,C48,C5,C51,C55,C56,C59,C6,C62,C65,C67,C72,C73,C76,C79,C8,C81,C82,C83,C84,C87,C9,D1,D2,D3,D4,D6
lof_cds	Chr7	3797078	A	AG	INDEL	1bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	124	A1,A13,A14,A18,A2,A20,A22,A3,A4,A5,B1,B10,B100,B104,B105,B106,B107,B109,B11,B110,B111,B112,B113,B117,B118,B12,B120,B123,B128,B130,B138,B139,B140,B15,B16,B17,B18,B2,B21,B23,B28,B29,B31,B37,B38,B39,B40,B42,B43,B44,B45,B47,B48,B50,B55,B57,B59,B63,B66,B67,B68,B69,B70,B71,B72,B75,B76,B79,B81,B82,B83,B84,B86,B89,B9,B95,B97,B98,C14,C15,C16,C2,C20,C21,C23,C28,C29,C30,C31,C33,C34,C36,C38,C4,C43,C44,C46,C47,C48,C5,C51,C55,C56,C59,C6,C62,C65,C67,C72,C73,C76,C79,C8,C81,C82,C83,C84,C87,C9,D1,D2,D3,D4,D6
lof_cds	Chr7	3797079	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	6	B103,B33,B90,C22,C44,C75
lof_cds	Chr7	3797081	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	5	B1,B126,B140,C45,C46
typical_cds_rare	Chr7	3797081	T	TG	INDEL	1bp_insertion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	5	B1,B126,B140,C45,C46
typical_cds_rare	Chr7	3797101	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B31,B95
typical_cds_rare	Chr7	3797107	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B1,C46
typical_cds_rare	Chr7	3797413	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B106,B41,C10
typical_cds_rare	Chr7	3797431	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	4	B38,B61,B80,B87
lof_cds	Chr7	3797491	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B38,B87
typical_cds_rare	Chr7	3797491	TC	T	INDEL	1bp_deletion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B38,B87
lof_cds	Chr7	3797499	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	B38
typical_cds_rare	Chr7	3797499	TC	T	INDEL	1bp_deletion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	B38
typical_cds_rare	Chr7	3797500	CCT	*	INDEL	2bp_deletion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	B38
typical_cds_rare	Chr7	3797551	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B24,B33,B53
typical_cds_rare	Chr7	3797568	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	B69
typical_cds_rare	Chr7	3797569	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B115,B44
typical_cds_rare	Chr7	3797687	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	A21,B101
typical_cds_rare	Chr7	3797717	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	D11
typical_cds_rare	Chr7	3797728	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	2	B2,C39
lof_cds	Chr7	3797781	T	TG	INDEL	1bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	38	A1,A15,A24,B107,B108,B114,B134,B140,B18,B22,B23,B34,B35,B4,B65,B75,B88,B97,C10,C14,C17,C2,C24,C3,C32,C36,C54,C61,C64,C66,C68,C70,C71,C73,C77,C82,D2,D4
lof_cds	Chr7	3797786	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	13	A2,A21,A5,A8,B101,B104,B63,C33,C58,C62,C71,C72,D11
lof_cds	Chr7	3797789	C	CTG	INDEL	2bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	13	A2,A21,A5,A8,B101,B104,B63,C33,C58,C62,C71,C72,D11
lof_cds	Chr7	3797808	ATT	A	INDEL	2bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	9	B29,B32,B46,B49,B68,C27,C29,C52,C79
lof_cds	Chr7	3797811	C	CCA	INDEL	2bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	9	B29,B32,B46,B49,B68,C27,C29,C52,C79
typical_cds_rare	Chr7	3797827	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	B43
typical_cds_rare	Chr7	3797846	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	B15
typical_cds_rare	Chr7	3797857	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	B97
lof_cds	Chr7	3797899	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	98	A1,A11,A23,A5,B1,B10,B101,B105,B106,B107,B110,B111,B112,B118,B119,B121,B126,B127,B13,B130,B131,B133,B134,B136,B2,B21,B28,B30,B36,B39,B4,B41,B44,B5,B54,B57,B6,B60,B61,B62,B65,B66,B69,B7,B76,B78,B79,B8,B82,B86,B91,B92,B94,B95,B96,B97,B98,B99,C1,C10,C19,C21,C25,C3,C34,C35,C36,C38,C39,C41,C45,C46,C47,C48,C50,C51,C53,C55,C57,C59,C61,C64,C67,C74,C75,C76,C78,C80,C85,C87,C9,D1,D11,D4,D5,D7,D8,D9
lof_cds	Chr7	3797901	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	99	A1,A11,A23,A5,B1,B10,B101,B105,B106,B107,B110,B111,B112,B118,B119,B121,B126,B127,B13,B130,B131,B133,B134,B136,B2,B21,B28,B30,B36,B39,B4,B41,B44,B5,B54,B57,B6,B60,B61,B62,B65,B66,B69,B7,B76,B78,B79,B8,B82,B86,B91,B92,B94,B95,B96,B97,B98,B99,C1,C10,C19,C21,C25,C3,C34,C35,C36,C38,C39,C41,C45,C46,C47,C48,C50,C51,C53,C55,C57,C59,C61,C64,C67,C72,C74,C75,C76,C78,C80,C85,C87,C9,D1,D11,D4,D5,D7,D8,D9
lof_cds	Chr7	3797906	ACG	A	INDEL	2bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	102	A1,A11,A23,A5,B1,B10,B101,B105,B106,B107,B110,B111,B112,B118,B119,B121,B126,B127,B13,B130,B131,B133,B134,B136,B14,B19,B2,B21,B28,B30,B36,B39,B4,B41,B44,B5,B54,B57,B6,B60,B61,B62,B65,B66,B69,B7,B76,B78,B79,B8,B82,B85,B86,B91,B92,B94,B95,B96,B97,B98,B99,C1,C10,C19,C21,C25,C3,C34,C35,C36,C38,C39,C41,C45,C46,C47,C48,C50,C51,C53,C55,C57,C59,C61,C64,C67,C72,C74,C75,C76,C78,C80,C85,C87,C9,D1,D11,D4,D5,D7,D8,D9
lof_cds	Chr7	3797913	T	TGA	INDEL	2bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	4	B104,B15,C27,C79
typical_cds_rare	Chr7	3797913	T	TGA	INDEL	2bp_insertion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	4	B104,B15,C27,C79
typical_cds_rare	Chr7	3797952	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	A13
lof_cds	Chr7	3797975	GGC	G	INDEL	2bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B135,B43,C18
typical_cds_rare	Chr7	3797975	GGC	G	INDEL	2bp_deletion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B135,B43,C18
lof_cds	Chr7	3797978	A	AGG	INDEL	2bp_insertion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B135,B43,C18
typical_cds_rare	Chr7	3797978	A	AGG	INDEL	2bp_insertion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B135,B43,C18
lof_cds	Chr7	3798006	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	4	A24,B135,B43,C18
typical_cds_rare	Chr7	3798006	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	4	A24,B135,B43,C18
typical_cds_rare	Chr7	3798030	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	A13
typical_cds_rare	Chr7	3798162	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	5	B70,B88,C28,C61,D11
lof_cds	Chr7	3798225	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	C48
typical_cds_rare	Chr7	3798225	GC	G	INDEL	1bp_deletion	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	C48
typical_cds_rare	Chr7	3798240	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	3	B119,B2,C39
lof_cds	Chr7	3798263	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	D11
typical_cds_rare	Chr7	3798263	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	1	D11
typical_cds_rare	Chr7	3798276	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130991734	SmilChr07G000551	130991734	rna-XM_057916101.1	5	B127,B58,C26,C79,C80