source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
typical_cds_rare	Chr7	4138039	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B42,C3
typical_cds_rare	Chr7	4138137	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	3	A14,C55,D6
typical_cds_rare	Chr7	4138156	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	C55,D6
lof_cds	Chr7	4138174	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	28	A10,A13,A18,A2,A24,A5,B106,B113,B126,B25,B35,B42,B43,B5,B51,B70,B81,B84,B9,C16,C20,C33,C58,C61,C62,C70,C82,C86
typical_cds_rare	Chr7	4138231	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B1,C47
typical_cds_rare	Chr7	4138232	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B1
typical_cds_rare	Chr7	4138266	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B44,C25,C3,C59,C83
typical_cds_rare	Chr7	4138274	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B44,C25,C3,C59,C83
typical_cds_rare	Chr7	4138297	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	3	B57,B91,C14
typical_cds_rare	Chr7	4138313	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B132,C80
typical_cds_rare	Chr7	4138441	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B132
lof_cds	Chr7	4138472	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	10	A24,A7,B10,B106,B38,C45,C62,C73,C74,C78
lof_cds	Chr7	4138476	ATC	A	INDEL	2bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	10	A24,A7,B10,B106,B38,C45,C62,C73,C74,C78
typical_cds_rare	Chr7	4138514	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B40
typical_cds_rare	Chr7	4138520	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B40
lof_cds	Chr7	4138549	C	CT	INDEL	1bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	8	A7,B106,B38,C45,C62,C73,C74,D8
lof_cds	Chr7	4138550	A	AGT	INDEL	2bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	8	A7,B106,B38,C45,C62,C73,C74,D8
lof_cds	Chr7	4138601	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	80	A19,A20,A22,A3,A8,B105,B107,B108,B109,B110,B114,B124,B125,B129,B132,B133,B136,B138,B139,B15,B18,B21,B23,B26,B27,B3,B36,B37,B4,B42,B43,B45,B47,B49,B50,B52,B54,B58,B59,B74,B75,B76,B78,B82,B87,B88,B90,B92,B93,B97,C10,C14,C18,C20,C21,C22,C24,C25,C27,C28,C29,C30,C31,C37,C40,C41,C45,C51,C52,C65,C72,C73,C75,C77,C79,C82,C85,C86,D10,D4
lof_cds	Chr7	4138604	TGG	T	INDEL	2bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B71,B77,C33,C46,D1
typical_cds_rare	Chr7	4138604	TGG	T	INDEL	2bp_deletion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B71,B77,C33,C46,D1
typical_cds_rare	Chr7	4138629	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B89,D11
lof_cds	Chr7	4138660	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	25	A20,A22,B107,B108,B110,B132,B18,B23,B26,B3,B36,B47,B75,B76,B90,B92,B97,C18,C21,C24,C25,C31,C82,C86,D4
typical_cds_rare	Chr7	4138701	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66
typical_cds_rare	Chr7	4138702	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C47
typical_cds_rare	Chr7	4138707	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	D10
typical_cds_rare	Chr7	4138727	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B117,B127,B19,C9,D7
lof_cds	Chr7	4138787	AG	A	INDEL	1bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C83
typical_cds_rare	Chr7	4138787	AG	A	INDEL	1bp_deletion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C83
typical_cds_rare	Chr7	4138813	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C83
lof_cds	Chr7	4138814	GCC	G	INDEL	2bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C83
typical_cds_rare	Chr7	4138814	GCC	G	INDEL	2bp_deletion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C83
typical_cds_rare	Chr7	4138823	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	3	B105,B56,C66
typical_cds_rare	Chr7	4138825	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	4	A15,B120,B86,C5
typical_cds_rare	Chr7	4138830	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66
typical_cds_rare	Chr7	4138833	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	4	A15,B120,B86,C5
lof_cds	Chr7	4138876	GAT	G	INDEL	2bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	9	A23,B66,B67,B68,B94,C25,C47,C83,D11
lof_cds	Chr7	4138879	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	35	A13,A2,A24,B10,B102,B11,B119,B131,B23,B25,B31,B40,B53,B56,B59,B6,B61,B62,B71,B86,B90,B92,B96,B97,C19,C27,C35,C37,C42,C57,C58,C73,C82,D10,D8
lof_cds	Chr7	4138882	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	64	A13,A20,A3,A8,B107,B108,B109,B110,B114,B119,B124,B129,B136,B139,B15,B18,B21,B26,B29,B3,B40,B42,B45,B47,B49,B50,B52,B53,B54,B58,B62,B74,B75,B78,B82,B87,B88,B92,B93,B97,C10,C14,C18,C19,C20,C21,C22,C24,C25,C28,C29,C30,C41,C43,C45,C51,C54,C65,C75,C79,C82,C85,C86,D4
typical_cds_rare	Chr7	4138924	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B89
typical_cds_rare	Chr7	4138956	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	4	B132,B66,B89,C80
typical_cds_rare	Chr7	4138969	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	D11
typical_cds_rare	Chr7	4138972	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	A8
lof_cds	Chr7	4139052	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	59	A2,A20,A22,A8,B105,B107,B109,B11,B125,B129,B131,B138,B139,B15,B18,B21,B26,B27,B36,B42,B45,B47,B49,B50,B52,B54,B66,B75,B78,B88,B89,B90,B92,B96,B97,C10,C24,C25,C27,C28,C29,C30,C31,C35,C37,C40,C41,C42,C45,C51,C54,C65,C77,C79,C82,C86,D11,D4,D8
lof_cds	Chr7	4139054	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	60	A2,A20,A22,A8,B105,B107,B109,B11,B125,B129,B131,B132,B138,B139,B15,B18,B21,B26,B27,B36,B42,B45,B47,B49,B50,B52,B54,B66,B75,B78,B88,B89,B90,B92,B96,B97,C10,C24,C25,C27,C28,C29,C30,C31,C35,C37,C40,C41,C42,C45,C51,C54,C65,C77,C79,C82,C86,D11,D4,D8
typical_cds_rare	Chr7	4139079	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C46
typical_cds_rare	Chr7	4139099	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B117,B127,B19,C9,D7
typical_cds_rare	Chr7	4139103	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C46
lof_cds	Chr7	4139119	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C84
typical_cds_rare	Chr7	4139119	T	TC	INDEL	1bp_insertion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	C84
typical_cds_rare	Chr7	4139165	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B128,B56,B94,B96,C80
typical_cds_rare	Chr7	4139169	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B14
lof_cds	Chr7	4139179	TAG	T	INDEL	2bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	74	A19,A20,A22,A8,B105,B107,B108,B109,B110,B129,B132,B133,B136,B138,B139,B15,B18,B21,B23,B26,B27,B3,B36,B37,B45,B47,B49,B50,B52,B54,B58,B59,B74,B75,B76,B78,B87,B88,B90,B92,B93,B97,C10,C14,C18,C20,C21,C22,C24,C25,C27,C28,C29,C30,C31,C37,C40,C41,C43,C45,C51,C52,C54,C65,C72,C73,C75,C77,C79,C82,C85,C86,D11,D4
lof_cds	Chr7	4139185	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	75	A19,A20,A22,A8,B105,B107,B108,B109,B110,B129,B132,B133,B136,B138,B139,B15,B18,B21,B23,B26,B27,B3,B36,B37,B45,B47,B49,B50,B52,B54,B58,B59,B74,B75,B76,B78,B87,B88,B89,B90,B92,B93,B97,C10,C14,C18,C20,C21,C22,C24,C25,C27,C28,C29,C30,C31,C37,C40,C41,C43,C45,C51,C52,C54,C65,C72,C73,C75,C77,C79,C82,C85,C86,D11,D4
typical_cds_rare	Chr7	4139210	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	4	B66,B90,B92,D6
lof_cds	Chr7	4139212	C	CG	INDEL	1bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	7	B122,B14,B28,B29,B80,C15,C4
typical_cds_rare	Chr7	4139228	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	5	B117,B127,B19,C9,D7
typical_cds_rare	Chr7	4139229	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	D10
lof_cds	Chr7	4139230	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	19	B113,B130,B134,B138,B16,B30,B33,B6,B73,B84,B85,B95,C12,C23,C67,C81,C87,D3,D9
lof_cds	Chr7	4139251	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	3	B15,B75,D2
typical_cds_rare	Chr7	4139251	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	3	B15,B75,D2
lof_cds	Chr7	4139255	AGC	A	INDEL	2bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B125,B2
typical_cds_rare	Chr7	4139255	AGC	A	INDEL	2bp_deletion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B125,B2
lof_cds	Chr7	4139258	T	TGG	INDEL	2bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B125,B2
typical_cds_rare	Chr7	4139258	T	TGG	INDEL	2bp_insertion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	2	B125,B2
lof_cds	Chr7	4139260	GC	G	INDEL	1bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	20	B113,B130,B134,B138,B16,B30,B33,B6,B61,B73,B84,B85,B95,C12,C23,C67,C81,C87,D3,D9
typical_cds_rare	Chr7	4139263	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B125
lof_cds	Chr7	4139269	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66
typical_cds_rare	Chr7	4139269	C	CA	INDEL	1bp_insertion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66
lof_cds	Chr7	4139295	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	17	A10,A13,A2,A24,A5,B106,B126,B25,B51,B81,C16,C20,C33,C58,C61,C62,C70
typical_cds_rare	Chr7	4139318	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B2
typical_cds_rare	Chr7	4139333	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B85
lof_cds	Chr7	4139338	TTC	T	INDEL	2bp_deletion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66
typical_cds_rare	Chr7	4139338	TTC	T	INDEL	2bp_deletion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66
lof_cds	Chr7	4139342	T	TGC	INDEL	2bp_insertion	frameshift_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66
typical_cds_rare	Chr7	4139342	T	TGC	INDEL	2bp_insertion	CDS_variant	LOC130993081	SmilChr07G000608	130993081	rna-XM_057917804.1	1	B66