source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr7	5635634	TAA	T	INDEL	2bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	65	A11,A19,A8,B101,B103,B105,B109,B11,B122,B123,B127,B128,B19,B21,B22,B23,B26,B29,B3,B30,B32,B38,B39,B43,B44,B46,B49,B52,B59,B69,B7,B71,B72,B75,B77,B82,B85,B86,B89,C12,C13,C19,C23,C25,C26,C27,C28,C31,C34,C48,C51,C55,C61,C62,C64,C66,C68,C69,C73,C74,C76,C82,C83,D11,D8
typical_cds_rare	Chr7	5635656	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C69
typical_cds_rare	Chr7	5635662	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	B62,B85,C15,C31,C49
lof_cds	Chr7	5635668	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	B103,C51,C62,C68
typical_cds_rare	Chr7	5635668	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	B103,C51,C62,C68
typical_cds_rare	Chr7	5635677	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	C15,C31
typical_cds_rare	Chr7	5635681	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C27
typical_cds_rare	Chr7	5635740	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	A19,B125,B7,C34,D11
typical_cds_rare	Chr7	5635746	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	A18,B21,B3,C13
typical_cds_rare	Chr7	5635770	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B2
typical_cds_rare	Chr7	5635808	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	A18,B21,B3,C13,C4
typical_cds_rare	Chr7	5635816	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	D8
lof_cds	Chr7	5635838	A	ATC	INDEL	2bp_insertion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	9	A1,B129,B130,B132,B46,B57,B81,C20,C55
lof_cds	Chr7	5635858	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	188	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A23,A24,A25,A3,A4,A7,A9,B1,B10,B101,B103,B104,B107,B108,B109,B11,B110,B112,B115,B118,B119,B12,B121,B122,B123,B126,B127,B128,B129,B130,B131,B132,B133,B135,B137,B138,B14,B15,B16,B17,B18,B2,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B35,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B47,B49,B5,B50,B51,B53,B54,B55,B57,B58,B59,B60,B62,B64,B67,B68,B71,B72,B75,B77,B79,B8,B80,B81,B82,B83,B84,B86,B87,B89,B93,B95,B96,B97,B98,B99,C1,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C22,C23,C25,C27,C28,C30,C32,C33,C34,C35,C36,C37,C38,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C57,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C70,C71,C72,C73,C74,C76,C78,C8,C81,C82,C83,C84,C86,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
lof_cds	Chr7	5635860	GA	G	INDEL	1bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	187	A1,A10,A13,A14,A15,A16,A18,A19,A2,A20,A23,A24,A25,A4,A7,A9,B1,B10,B101,B103,B104,B107,B108,B109,B11,B110,B112,B115,B118,B119,B12,B121,B122,B123,B126,B127,B128,B129,B130,B131,B132,B133,B135,B137,B138,B14,B15,B16,B17,B18,B2,B22,B23,B24,B25,B26,B27,B28,B29,B3,B30,B31,B32,B33,B35,B37,B38,B39,B4,B40,B41,B42,B43,B45,B46,B47,B49,B5,B50,B51,B53,B54,B55,B57,B58,B59,B60,B62,B64,B67,B68,B71,B72,B75,B77,B79,B8,B80,B81,B82,B83,B84,B86,B87,B89,B93,B95,B96,B97,B98,B99,C1,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C22,C23,C25,C27,C28,C30,C32,C33,C34,C35,C36,C37,C38,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C57,C59,C6,C60,C61,C62,C63,C64,C66,C67,C68,C69,C70,C71,C72,C73,C74,C76,C78,C8,C81,C82,C83,C84,C86,D1,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
lof_cds	Chr7	5635863	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	23	A1,A23,A4,B10,B117,B135,B30,B41,B43,B48,B86,B93,C11,C14,C20,C23,C5,C50,C52,C75,C82,D3,D5
lof_cds	Chr7	5635876	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	17	A2,A3,B103,B11,B126,B13,B138,B17,B32,B33,B5,B54,B81,C19,C49,C55,D8
typical_cds_rare	Chr7	5635892	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	A14,B17,B9,C73
typical_cds_rare	Chr7	5635926	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	B85,C49
typical_cds_rare	Chr7	5635940	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	A24,B104,C42
typical_cds_rare	Chr7	5635979	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	B136,B52,B64,B84,C84
typical_cds_rare	Chr7	5636021	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	B62,B85,C49
typical_cds_rare	Chr7	5636025	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	A1,B140,C40,C69
lof_cds	Chr7	5636031	G	GC	INDEL	1bp_insertion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C12
typical_cds_rare	Chr7	5636031	G	GC	INDEL	1bp_insertion	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C12
lof_cds	Chr7	5636034	TGA	T	INDEL	2bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C12
typical_cds_rare	Chr7	5636034	TGA	T	INDEL	2bp_deletion	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C12
typical_cds_rare	Chr7	5636060	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	D11
typical_cds_rare	Chr7	5636100	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	B50,D8
lof_cds	Chr7	5636133	G	A	SNV	EMS_canonical_SNV	stop_gained	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	6	A10,B103,B50,C17,C69,D8
typical_cds_rare	Chr7	5636169	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	C68,C71
typical_cds_rare	Chr7	5636530	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C52
lof_cds	Chr7	5636558	C	CTT	INDEL	2bp_insertion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	218	A1,A10,A11,A13,A14,A15,A16,A19,A22,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B101,B102,B103,B104,B105,B106,B107,B108,B110,B111,B112,B113,B115,B117,B120,B121,B122,B123,B124,B125,B127,B128,B13,B130,B132,B133,B134,B135,B136,B137,B138,B14,B140,B16,B17,B18,B19,B2,B21,B22,B23,B24,B26,B27,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B69,B7,B71,B72,B74,B75,B76,B77,B78,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B92,B93,B94,B95,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D1,D11,D2,D4,D5,D6,D8,D9
lof_cds	Chr7	5636559	CGG	C	INDEL	2bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	218	A1,A10,A11,A13,A14,A15,A16,A19,A22,A23,A24,A25,A3,A4,A5,A6,A7,A9,B1,B10,B101,B102,B103,B104,B105,B106,B107,B108,B110,B111,B112,B113,B115,B117,B120,B121,B122,B123,B124,B125,B127,B128,B13,B130,B132,B133,B134,B135,B136,B137,B138,B14,B140,B16,B17,B18,B19,B2,B21,B22,B23,B24,B26,B27,B28,B29,B3,B30,B32,B33,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B69,B7,B71,B72,B74,B75,B76,B77,B78,B80,B81,B82,B83,B84,B85,B86,B87,B88,B89,B92,B93,B94,B95,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C24,C25,C26,C27,C28,C29,C3,C30,C31,C32,C33,C34,C35,C37,C38,C39,C4,C40,C41,C42,C43,C44,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C56,C57,C58,C59,C61,C62,C63,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C74,C75,C76,C77,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D1,D11,D2,D4,D5,D6,D8,D9
typical_cds_rare	Chr7	5636591	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	A3,D2
typical_cds_rare	Chr7	5636604	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	B21,B3,C4
typical_cds_rare	Chr7	5636613	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	B123,B29,B33
typical_cds_rare	Chr7	5636615	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	B85,D6
typical_cds_rare	Chr7	5636619	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	B30,B55,B59,B74,C83
typical_cds_rare	Chr7	5636642	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B139
typical_cds_rare	Chr7	5636680	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	C38,C61,C74,D11
typical_cds_rare	Chr7	5636691	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	C62,C80
typical_cds_rare	Chr7	5636708	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B139
typical_cds_rare	Chr7	5636780	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B64
typical_cds_rare	Chr7	5636807	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	A2,B131,B53,B56,B96
lof_cds	Chr7	5636822	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	B33,B65,B77
typical_cds_rare	Chr7	5636822	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	B33,B65,B77
lof_cds	Chr7	5636823	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	13	B110,B115,B21,B23,B41,B63,B95,B98,C24,C41,C5,C68,D2
typical_cds_rare	Chr7	5636842	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	B139,B2
typical_cds_rare	Chr7	5636844	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	B139,B87
typical_cds_rare	Chr7	5636888	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	B47,B57,C14,C43
typical_cds_rare	Chr7	5636915	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	A18,B21,B3,C13,C4
typical_cds_rare	Chr7	5636937	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	B85,C49
typical_cds_rare	Chr7	5636938	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	B14,B3,B83,B98,C19
lof_cds	Chr7	5636950	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	32	A11,A18,A20,A21,A9,B105,B109,B124,B128,B15,B21,B27,B29,B45,B62,B73,B85,B91,C11,C20,C27,C31,C34,C38,C51,C56,C61,C64,C66,C69,C75,C85
typical_cds_rare	Chr7	5636958	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	C35,C42,C54,C57
typical_cds_rare	Chr7	5636982	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C25
typical_cds_rare	Chr7	5637067	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	A2,A23,B67
typical_cds_rare	Chr7	5637079	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C68
lof_cds	Chr7	5637080	CA	C	INDEL	1bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B104
typical_cds_rare	Chr7	5637080	CA	C	INDEL	1bp_deletion	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B104
typical_cds_rare	Chr7	5637104	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	5	B57,B76,B85,C35,C36
lof_cds	Chr7	5637123	GT	G	INDEL	1bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B104
typical_cds_rare	Chr7	5637123	GT	G	INDEL	1bp_deletion	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B104
lof_cds	Chr7	5637144	AT	A	INDEL	1bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	21	B119,B123,B136,B14,B140,B23,B35,B41,B61,B63,B79,B94,B98,C22,C24,C29,C41,C5,C65,C82,D4
lof_cds	Chr7	5637166	G	GT	INDEL	1bp_insertion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	17	B125,B2,B23,B28,B31,B57,B65,B76,B77,B87,B93,C2,C42,C53,C77,C78,C79
typical_cds_rare	Chr7	5637175	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	B42
lof_cds	Chr7	5637182	C	T	SNV	EMS_canonical_SNV	stop_gained	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	25	A13,A21,A4,B124,B138,B20,B26,B31,B47,B52,B55,B58,B6,B65,B70,B91,C12,C16,C22,C29,C40,C5,C58,C67,C7
lof_cds	Chr7	5637189	CG	C	INDEL	1bp_deletion	frameshift_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C79
typical_cds_rare	Chr7	5637189	CG	C	INDEL	1bp_deletion	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	1	C79
typical_cds_rare	Chr7	5637194	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	3	B108,B33,B99
typical_cds_rare	Chr7	5637243	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	2	B23,B58
typical_cds_rare	Chr7	5637326	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130993751	SmilChr07G000799	130993751	rna-XM_057918788.1	4	A19,B125,B7,C34