source	chrom	pos	ref	alt	variant_type	ems_class	effect	gene_id	standard_gene_id	ncbi_geneid	transcripts	carrier_n	carriers
lof_cds	Chr7	11542540	AGT	A	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	4	B57,B63,C12,D5
typical_cds_rare	Chr7	11542540	AGT	A	INDEL	2bp_deletion	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	4	B57,B63,C12,D5
typical_cds_rare	Chr7	11542546	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	3	B63,C12,D5
typical_cds_rare	Chr7	11542557	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	3	B63,C12,D5
lof_cds	Chr7	11542619	TG	T	INDEL	1bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	87	A1,A10,A13,A19,A2,A21,A23,A3,A4,A5,A6,A7,B105,B107,B113,B114,B115,B117,B119,B122,B125,B126,B127,B129,B130,B136,B16,B20,B22,B24,B25,B26,B28,B29,B30,B36,B48,B53,B55,B57,B59,B60,B62,B63,B65,B66,B67,B69,B7,B74,B78,B83,B84,B86,B92,B93,B99,C12,C14,C15,C21,C23,C34,C35,C4,C41,C43,C45,C46,C50,C56,C57,C58,C6,C62,C67,C69,C72,C74,C75,C8,C82,C86,D10,D2,D3,D5
lof_cds	Chr7	11542625	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	98	A1,A10,A13,A14,A19,A2,A21,A23,A3,A4,A5,A6,A7,B103,B105,B107,B113,B114,B115,B117,B119,B122,B125,B126,B127,B129,B130,B133,B135,B136,B140,B16,B20,B22,B23,B24,B25,B26,B28,B29,B30,B36,B46,B48,B53,B55,B57,B59,B60,B62,B63,B65,B66,B67,B69,B7,B74,B78,B83,B84,B86,B92,B93,B99,C12,C14,C15,C21,C23,C34,C35,C4,C41,C43,C45,C46,C50,C56,C57,C58,C6,C60,C62,C67,C69,C72,C73,C74,C75,C8,C82,C86,C87,D10,D2,D3,D5,D9
lof_cds	Chr7	11542634	A	ATT	INDEL	2bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	105	A1,A10,A13,A14,A19,A2,A21,A23,A3,A4,A5,A6,A7,B103,B105,B107,B113,B114,B115,B117,B119,B122,B125,B126,B127,B129,B130,B133,B135,B136,B16,B20,B22,B23,B24,B25,B26,B28,B29,B30,B36,B39,B44,B46,B48,B53,B55,B57,B59,B60,B62,B63,B65,B66,B67,B69,B7,B74,B78,B83,B84,B86,B92,B93,B99,C12,C14,C15,C16,C2,C21,C23,C34,C35,C4,C41,C43,C44,C45,C46,C48,C50,C54,C56,C57,C58,C6,C60,C62,C67,C69,C71,C72,C73,C74,C75,C8,C82,C86,C87,D10,D2,D3,D5,D9
lof_cds	Chr7	11542655	TA	T	INDEL	1bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	115	A1,A10,A13,A14,A16,A19,A2,A21,A23,A3,A4,A5,A6,A7,B1,B101,B103,B105,B107,B113,B114,B115,B117,B119,B122,B125,B126,B127,B129,B130,B133,B135,B136,B140,B15,B16,B20,B22,B23,B24,B25,B26,B28,B29,B30,B36,B39,B43,B44,B46,B48,B53,B54,B55,B57,B59,B60,B62,B63,B65,B66,B67,B69,B7,B71,B74,B78,B8,B83,B84,B86,B89,B90,B92,B93,B99,C12,C14,C15,C21,C23,C34,C35,C4,C41,C43,C44,C45,C46,C48,C50,C52,C54,C56,C57,C58,C6,C60,C62,C67,C69,C71,C72,C73,C74,C75,C8,C82,C86,C87,D10,D2,D3,D5,D9
lof_cds	Chr7	11542659	G	GA	INDEL	1bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	14	A14,A3,B103,B133,B136,B44,B54,B57,C14,C15,C45,C57,C60,C87
lof_cds	Chr7	11542837	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	2	B53,B62
typical_cds_rare	Chr7	11542837	C	CA	INDEL	1bp_insertion	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	2	B53,B62
lof_cds	Chr7	11542838	T	TC	INDEL	1bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	173	A1,A10,A13,A14,A16,A18,A19,A2,A20,A21,A23,A3,A4,A5,A7,A9,B1,B10,B100,B101,B102,B103,B105,B106,B107,B109,B11,B110,B111,B113,B114,B115,B117,B119,B120,B121,B125,B126,B127,B129,B13,B130,B133,B134,B135,B136,B137,B138,B140,B15,B16,B17,B18,B20,B21,B22,B23,B24,B25,B26,B28,B29,B30,B31,B33,B36,B38,B39,B43,B44,B48,B50,B53,B54,B55,B57,B58,B59,B6,B60,B61,B63,B64,B65,B66,B67,B69,B7,B71,B74,B75,B77,B78,B79,B8,B81,B83,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B97,B99,C11,C12,C13,C14,C15,C16,C18,C20,C21,C23,C26,C29,C3,C30,C33,C34,C35,C36,C37,C4,C41,C43,C44,C45,C46,C47,C48,C50,C52,C53,C54,C56,C57,C58,C6,C60,C62,C67,C69,C7,C71,C72,C73,C74,C75,C76,C79,C8,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D9
lof_cds	Chr7	11542842	C	CA	INDEL	1bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	174	A1,A10,A13,A14,A16,A18,A19,A2,A20,A21,A23,A3,A4,A5,A7,A9,B1,B10,B100,B101,B102,B103,B105,B106,B107,B109,B11,B110,B111,B113,B114,B115,B117,B119,B120,B121,B122,B125,B126,B127,B129,B13,B130,B133,B134,B135,B136,B137,B138,B140,B15,B16,B17,B18,B20,B21,B22,B23,B24,B25,B26,B28,B29,B30,B31,B33,B36,B38,B39,B43,B44,B48,B50,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B7,B71,B74,B75,B77,B78,B79,B8,B81,B83,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B97,B99,C11,C12,C13,C14,C15,C16,C18,C20,C21,C23,C26,C29,C3,C30,C33,C34,C35,C36,C37,C4,C41,C43,C44,C45,C46,C47,C48,C50,C52,C53,C54,C56,C57,C58,C6,C60,C62,C67,C69,C7,C71,C72,C73,C74,C75,C76,C79,C8,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D9
lof_cds	Chr7	11542844	AAC	A	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	174	A1,A10,A13,A14,A16,A18,A19,A2,A20,A21,A23,A3,A4,A5,A7,A9,B1,B10,B100,B101,B102,B103,B105,B106,B107,B109,B11,B110,B111,B113,B114,B115,B117,B119,B120,B121,B122,B125,B126,B127,B129,B13,B130,B133,B134,B135,B136,B137,B138,B140,B15,B16,B17,B18,B20,B21,B22,B23,B24,B25,B26,B28,B29,B30,B31,B33,B36,B38,B39,B43,B44,B48,B50,B53,B54,B55,B57,B58,B59,B6,B60,B61,B62,B63,B64,B65,B66,B67,B7,B71,B74,B75,B77,B78,B79,B8,B81,B83,B84,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B97,B99,C11,C12,C13,C14,C15,C16,C18,C20,C21,C23,C26,C29,C3,C30,C33,C34,C35,C36,C37,C4,C41,C43,C44,C45,C46,C47,C48,C50,C52,C53,C54,C56,C57,C58,C6,C60,C62,C67,C69,C7,C71,C72,C73,C74,C75,C76,C79,C8,C81,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D3,D4,D5,D9
typical_cds_rare	Chr7	11542856	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	5	A13,B22,B49,B79,C36
typical_cds_rare	Chr7	11542875	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	C4
typical_cds_rare	Chr7	11542906	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	B62
typical_cds_rare	Chr7	11542916	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	B78
typical_cds_rare	Chr7	11543862	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	5	B42,B43,B57,B72,C62
typical_cds_rare	Chr7	11543874	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	D6
typical_cds_rare	Chr7	11543929	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	4	A2,B131,B56,B96
lof_cds	Chr7	11543969	A	AAT	INDEL	2bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	85	A11,A13,A19,A20,A21,A3,A4,A5,A7,B1,B10,B101,B102,B11,B110,B111,B113,B114,B117,B120,B122,B124,B125,B127,B129,B13,B130,B134,B138,B140,B15,B23,B30,B33,B44,B53,B54,B55,B57,B6,B62,B63,B64,B66,B69,B7,B71,B74,B81,B83,B84,B86,B87,B89,B91,B92,B94,B99,C12,C16,C20,C23,C33,C36,C41,C46,C50,C54,C56,C58,C6,C69,C72,C74,C75,C79,C81,C82,C84,C86,C87,D1,D2,D3,D5
lof_cds	Chr7	11543971	GTC	G	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	86	A11,A13,A19,A20,A21,A3,A4,A5,A7,B1,B10,B101,B102,B11,B110,B111,B113,B114,B117,B120,B122,B124,B125,B127,B129,B13,B130,B134,B138,B140,B15,B23,B30,B33,B44,B53,B54,B55,B57,B6,B62,B63,B64,B66,B69,B7,B71,B74,B81,B83,B84,B86,B87,B89,B91,B92,B94,B99,C12,C15,C16,C20,C23,C33,C36,C41,C46,C50,C54,C56,C58,C6,C69,C72,C74,C75,C79,C81,C82,C84,C86,C87,D1,D2,D3,D5
lof_cds	Chr7	11543977	AAG	A	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	2	A7,B129
typical_cds_rare	Chr7	11543977	AAG	A	INDEL	2bp_deletion	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	2	A7,B129
typical_cds_rare	Chr7	11544010	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	D10
lof_cds	Chr7	11544040	TC	T	INDEL	1bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	89	A10,A13,A19,A20,A21,A3,A4,A7,B1,B10,B101,B102,B11,B111,B113,B114,B117,B119,B122,B125,B127,B129,B13,B130,B134,B135,B138,B140,B15,B18,B20,B24,B25,B30,B33,B36,B38,B48,B53,B6,B62,B63,B64,B65,B66,B67,B69,B7,B71,B77,B78,B81,B83,B84,B86,B87,B92,B99,C11,C12,C20,C21,C23,C26,C29,C33,C36,C41,C46,C50,C53,C54,C56,C58,C6,C69,C7,C72,C74,C76,C79,C82,C84,C86,C9,D1,D2,D4,D5
lof_cds	Chr7	11544080	C	CGG	INDEL	2bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	109	A10,A13,A14,A20,A21,A3,A4,A7,B1,B10,B101,B102,B106,B109,B11,B111,B113,B114,B117,B119,B120,B121,B122,B125,B127,B129,B13,B130,B134,B135,B137,B138,B140,B15,B18,B20,B24,B25,B29,B30,B31,B33,B38,B48,B53,B57,B58,B6,B62,B63,B64,B65,B66,B67,B69,B7,B71,B74,B77,B78,B81,B83,B84,B86,B87,B89,B9,B91,B92,B99,C11,C12,C14,C20,C21,C23,C26,C29,C33,C36,C41,C45,C46,C50,C53,C54,C58,C6,C69,C7,C72,C74,C75,C76,C79,C8,C81,C82,C83,C86,C87,C9,D1,D10,D2,D3,D4,D5,D9
lof_cds	Chr7	11544081	AAT	A	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	105	A10,A13,A14,A20,A21,A3,A4,A7,B1,B10,B101,B102,B106,B109,B11,B111,B113,B114,B117,B120,B121,B122,B125,B127,B129,B13,B130,B134,B135,B137,B138,B140,B15,B18,B20,B24,B25,B29,B33,B38,B48,B53,B57,B58,B6,B62,B63,B64,B65,B66,B67,B69,B7,B71,B74,B77,B78,B81,B83,B84,B86,B87,B89,B9,B91,B92,B99,C11,C12,C14,C20,C21,C23,C26,C29,C33,C36,C41,C45,C46,C50,C53,C54,C58,C6,C69,C7,C72,C74,C75,C76,C79,C8,C81,C82,C83,C86,C87,C9,D1,D2,D3,D4,D5,D9
lof_cds	Chr7	11544098	T	TCC	INDEL	2bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	87	A10,A13,A14,A20,A21,A3,A4,A7,B10,B102,B106,B109,B11,B111,B114,B121,B122,B125,B127,B129,B134,B135,B137,B138,B140,B15,B18,B20,B24,B25,B29,B31,B33,B44,B48,B58,B6,B62,B64,B65,B66,B67,B69,B7,B74,B75,B77,B78,B81,B84,B86,B89,B9,B91,B92,B99,C11,C14,C20,C26,C29,C33,C36,C37,C41,C45,C46,C53,C54,C58,C69,C7,C72,C73,C74,C75,C76,C79,C8,C83,C86,C87,C9,D2,D3,D4,D5
lof_cds	Chr7	11544101	CAT	C	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	20	A21,B1,B10,B101,B113,B129,B130,B15,B6,B63,B83,B89,C12,C23,C43,C50,C67,C81,D1,D9
lof_cds	Chr7	11544102	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	86	A10,A13,A14,A20,A21,A3,A4,A7,B102,B106,B109,B11,B111,B114,B121,B122,B125,B127,B134,B135,B136,B137,B138,B140,B18,B20,B24,B25,B29,B31,B33,B36,B44,B48,B58,B62,B64,B65,B66,B67,B69,B7,B74,B75,B77,B78,B81,B84,B86,B89,B9,B91,B92,B99,C11,C14,C20,C26,C29,C33,C36,C37,C41,C45,C46,C53,C54,C58,C69,C7,C72,C73,C74,C75,C76,C79,C8,C83,C86,C87,C9,D10,D2,D3,D4,D5
typical_cds_rare	Chr7	11544162	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	B20
typical_cds_rare	Chr7	11544174	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	B65
lof_cds	Chr7	11544187	ATG	A	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	5	A8,B18,B23,C53,C54
typical_cds_rare	Chr7	11544187	ATG	A	INDEL	2bp_deletion	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	5	A8,B18,B23,C53,C54
lof_cds	Chr7	11544194	TTA	T	INDEL	2bp_deletion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	C31
typical_cds_rare	Chr7	11544194	TTA	T	INDEL	2bp_deletion	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	C31
typical_cds_rare	Chr7	11544206	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	C43
typical_cds_rare	Chr7	11544330	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	4	B42,B43,B57,B72
typical_cds_rare	Chr7	11544354	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	3	B42,B57,B72
typical_cds_rare	Chr7	11544390	C	T	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	4	C71,D10,D11,D6
typical_cds_rare	Chr7	11544577	G	A	SNV	EMS_canonical_SNV	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	1	B87
lof_cds	Chr7	11544653	A	AT	INDEL	1bp_insertion	frameshift_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	3	C43,C82,C87
typical_cds_rare	Chr7	11544653	A	AT	INDEL	1bp_insertion	CDS_variant	LOC130992603	SmilChr07G001470	130992603	rna-XM_057917306.1	3	C43,C82,C87