当前解析结果
SmilChr05G002030| 统一新 Gene ID | SmilChr05G002030 |
|---|---|
| 名称 | SmilChr05G002030 |
| 描述 | kinesin-like protein KIN-7E |
| 染色体 / SeqID | Chr05 / NC_080391.1 |
| 坐标与链方向 | 21087317 - 21093071 / - |
| NCBI Gene ID | LOC130986672 |
|---|---|
| GeneID | 130986672 |
| locus_tag | - |
| NCBI Name | LOC130986672 |
| 原始查询 | LOC130986672 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-7E |
| 产物 | kinesin-like protein KIN-7E |
| Arabidopsis | AT5G66310 (AT5G66310)ATP binding microtubule motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836763] identity=59; qcov=0.599; evalue=0; confidence=medium |
| Rice | Os02g0645100 (KIN7C)- identity=46.2; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF11995 (DUF3490); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130986672 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057766123.1 |
| 2 | Phragmoplast | Phragmoplast | 0.80000 | XP_057766123.1 |
| 3 | Spindle pole | Spindle pole | 0.60000 | XP_057766123.1 |
| 4 | Chromosome | 染色体 | 0.40000 | XP_057766123.1 |
| 5 | Spindle | Spindle | 0.40000 | XP_057766123.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr5:21087592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B129,D6 |
Chr5:21087709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B72,C82 |
Chr5:21087714 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C31 |
Chr5:21087727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B62,C34 |
Chr5:21087750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr5:21087851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr5:21088429 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B35,B70,B73,C31 |
Chr5:21088549 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C23 |
Chr5:21088828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C86 |
Chr5:21088855 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B107,D10 |
Chr5:21088946 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,D11 |
Chr5:21089345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057766123.1PF00225
Kinesin 23-342 aa
PF16796
Microtub_bd 47-157 aa
PF11995
DUF3490 769-931 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057766123.1 |
Pfam | PF00225 |
Kinesin | Domain | 23 | 342 | 2.6e-98 | 329.7 | Kinesin motor domain |
XP_057766123.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 47 | 157 | 6.6e-20 | 72.3 | Microtubule binding |
XP_057766123.1 |
Pfam | PF11995 |
DUF3490 | Family | 769 | 931 | 3e-68 | 229.4 | Domain of unknown function (DUF3490) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。