当前解析结果
SmilChr07G003745| 统一新 Gene ID | SmilChr07G003745 |
|---|---|
| 名称 | SmilChr07G003745 |
| 描述 | type I inositol polyphosphate 5-phosphatase 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 45674464 - 45679456 / + |
| NCBI Gene ID | LOC130992768 |
|---|---|
| GeneID | 130992768 |
| locus_tag | - |
| NCBI Name | LOC130992768 |
| 原始查询 | LOC130992768 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | type I inositol polyphosphate 5-phosphatase 2 |
| 产物 | type I inositol polyphosphate 5-phosphatase 2 |
| Arabidopsis | AT4G18010 (IP5PII)myo-inositol polyphosphate 5-phosphatase 2 [Source:NCBI gene (formerly Entrezgene);Acc:827526] identity=52.1; qcov=1.07; evalue=0; confidence=high |
| Rice | Os01g0716800- identity=41.3; qcov=1.03; evalue=1.61e-156; confidence=medium |
| GO | GO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation) |
| KEGG | smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF22669 (Exo_endo_phos2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130992768 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057773493.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057773493.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773493.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773493.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773493.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:45675018 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,A21,B20,B7,C86 |
Chr7:45676076 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:45676954 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B21,B61,C26 |
Chr7:45677372 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:45677435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A4,C11,C67,C69 |
Chr7:45677599 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C57 |
Chr7:45677599 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C57 |
Chr7:45678308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C35,C40 |
Chr7:45679143 |
AT |
A |
1bp_deletion | frameshift_variant | 6 | A20,B126,B59,C34,C59,C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773493.1PF22669
Exo_endo_phos2 108-181 aa
PF22669
Exo_endo_phos2 353-580 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773493.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 108 | 181 | 7.5e-74 | 249.6 | Endonuclease/Exonuclease/phosphatase family 2 |
XP_057773493.1 |
Pfam | PF22669 |
Exo_endo_phos2 | Domain | 353 | 580 | 7.5e-74 | 249.6 | Endonuclease/Exonuclease/phosphatase family 2 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。