当前解析结果
SmilChr08G003253| 统一新 Gene ID | SmilChr08G003253 |
|---|---|
| 名称 | SmilChr08G003253 |
| 描述 | uncharacterized SmilChr08G003253 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 33492583 - 33495425 / - |
| NCBI Gene ID | LOC130997824 |
|---|---|
| GeneID | 130997824 |
| locus_tag | - |
| NCBI Name | LOC130997824 |
| 原始查询 | LOC130997824 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) [Source:NCBI gene (formerly Entrezgene);Acc:832835]; symbol=AT5G27730; hit=AT5G27730; species=arabidopsis; confidence=high |
| 产物 | heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) [Source:NCBI gene (formerly Entrezgene);Acc:832835]; symbol=AT5G27730; hit=AT5G27730; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G27730 (AT5G27730)heparan-alpha-glucosaminide N-acetyltransferase-like protein (DUF1624) [Source:NCBI gene (formerly Entrezgene);Acc:832835] identity=57.3; qcov=0.965; evalue=0; confidence=high |
| Rice | Os01g0931100- identity=56.8; qcov=0.973; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF07786 (HGSNAT_cat) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997824 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057779243.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057779243.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.40000 | XP_057779243.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057779243.1 |
| 5 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057779243.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:33492870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B127,B43,B51,C21,C49 |
Chr8:33493013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr8:33493083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B34,C20 |
Chr8:33493091 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B35,C22,C4,C73 |
Chr8:33493152 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B46,C22,C82 |
Chr8:33493414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B100,C83 |
Chr8:33494134 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr8:33494154 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C12 |
Chr8:33494154 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C12 |
Chr8:33494298 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,C31 |
Chr8:33494352 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr8:33494877 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779243.1PF07786
HGSNAT_cat 52-192 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779243.1 |
Pfam | PF07786 |
HGSNAT_cat | Domain | 52 | 192 | 1.4e-06 | 28.7 | Heparan-alpha-glucosaminide N-acetyltransferase, catalytic |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。