当前解析结果
SmilChr08G003387| 统一新 Gene ID | SmilChr08G003387 |
|---|---|
| 名称 | SmilChr08G003387 |
| 描述 | enolase |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 35610812 - 35614781 / + |
| NCBI Gene ID | LOC130997935 |
|---|---|
| GeneID | 130997935 |
| locus_tag | - |
| NCBI Name | LOC130997935 |
| 原始查询 | LOC130997935 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | enolase |
| 产物 | enolase |
| Arabidopsis | AT2G36530 (LOS2)Enolase [Source:NCBI gene (formerly Entrezgene);Acc:818226] identity=90.5; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0248600 (OsEno2)- identity=88.3; qcov=0.998; evalue=0; confidence=high |
| GO | GO:0000015 (phosphopyruvate hydratase complex); GO:0000287 (magnesium ion binding); GO:0004634 (phosphopyruvate hydratase activity); GO:0006096 (glycolytic process) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage)); smil04820 (Cytoskeleton in muscle cells - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00113 (Enolase_C); PF03952 (Enolase_N); PF13378 (MR_MLE_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130997935 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057779352.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057779352.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057779352.1 |
| 4 | Melanosome | Melanosome | 0.20000 | XP_057779352.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057779352.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:35611115 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr8:35611371 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr8:35613598 |
TC |
T |
1bp_deletion | frameshift_variant | 12 | A3,B115,B118,B137,B41,B44,C11,C24,C53,C61,C67,D4 |
Chr8:35613602 |
C |
CA |
1bp_insertion | frameshift_variant | 12 | A3,B115,B118,B137,B41,B44,C11,C24,C53,C61,C67,D4 |
Chr8:35613640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr8:35613700 |
CCA |
C |
2bp_deletion | frameshift_variant | 44 | A10,A19,A20,A3,A9,B103,B105,B108,B109,B115,B118,B130,B137,B23,B24,B32,B37,B40,B41,B44,B5,B55,B69,B71,B75,B99,C11,C12,C19,C20,C24,C28,C42,C46,C5,C51,C53,C58,C61,C67,C70,C71,D4,D8 |
Chr8:35613705 |
A |
AGC |
2bp_insertion | frameshift_variant | 44 | A10,A19,A20,A3,A9,B103,B105,B108,B109,B115,B118,B130,B137,B23,B24,B32,B37,B40,B41,B44,B5,B55,B69,B71,B75,B99,C11,C12,C19,C20,C24,C28,C42,C46,C5,C51,C53,C58,C61,C67,C70,C71,D4,D8 |
Chr8:35613721 |
GTA |
G |
2bp_deletion | frameshift_variant | 26 | A10,A20,A3,B103,B108,B109,B115,B118,B130,B137,B24,B32,B40,B44,B5,B55,B71,C12,C28,C42,C5,C53,C58,C61,C67,C70 |
Chr8:35613726 |
C |
CCA |
2bp_insertion | frameshift_variant | 25 | A10,A20,A3,B103,B108,B109,B115,B118,B130,B137,B24,B32,B40,B44,B5,B55,B71,C12,C28,C42,C5,C53,C58,C61,C70 |
Chr8:35613888 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B16,B69 |
Chr8:35613900 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr8:35613915 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057779352.1PF03952
Enolase_N 4-139 aa
PF00113
Enolase_C 148-439 aa
PF13378
MR_MLE_C 292-401 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057779352.1 |
Pfam | PF03952 |
Enolase_N | Domain | 4 | 139 | 4e-55 | 186.3 | Enolase, N-terminal domain |
XP_057779352.1 |
Pfam | PF00113 |
Enolase_C | Domain | 148 | 439 | 3.1e-157 | 523.1 | Enolase, C-terminal TIM barrel domain |
XP_057779352.1 |
Pfam | PF13378 |
MR_MLE_C | Domain | 292 | 401 | 6.1e-08 | 33.4 | Enolase C-terminal domain-like |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。