Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G000282`

染色体: Chr08 坐标: 1921466-1926965 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G000282`
名称	SmilChr08G000282
描述	probable hydroxyacylglutathione hydrolase 2, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	1921466 - 1926965 / `-`

ID 对照

NCBI Gene ID	`LOC130999870`
GeneID	`130999870`
locus_tag	`-`
NCBI Name	`LOC130999870`
原始查询	`LOC130999870`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable hydroxyacylglutathione hydrolase 2, chloroplastic
产物	probable hydroxyacylglutathione hydrolase 2%2C chloroplastic
Arabidopsis	`AT1G06130` (GLX2-4) glyoxalase 2-4 [Source:NCBI gene (formerly Entrezgene);Acc:837122] identity=71.9; qcov=0.927; evalue=2e-173; confidence=high
Rice	`Os09g0516600` (OsGLYII3) - identity=62.3; qcov=1.01; evalue=1.43e-155; confidence=high
GO	GO:0004416 (hydroxyacylglutathione hydrolase activity); GO:0019243 (GO:0019243)
KEGG	smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00753 (Lactamase_B); PF16123 (HAGH_C)
InterPro	-
eggNOG	-
NR	GeneID:130999870

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057781535.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057781535.1`
3	Nucleus	细胞核	0.00000	`XP_057781535.1`
4	Chromosome	染色体	0.00000	`XP_057781535.1`
5	Centromere	着丝粒	0.00000	`XP_057781535.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:1922652`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B114,C47,C50,C78
`Chr8:1923078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B103,B13,D3,D4
`Chr8:1924313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B62,C42
`Chr8:1924581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A16,B120,B69,B87,B95
`Chr8:1924582`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr8:1925520`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B134,B93,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057781535.1

331 aa

166

331

Lactamase_B

HAGH_C

PF00753 Lactamase_B 91-246 aa PF16123 HAGH_C 247-331 aa

XP_057781536.1

330 aa

165

330

Lactamase_B

HAGH_C

PF00753 Lactamase_B 90-245 aa PF16123 HAGH_C 246-330 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057781535.1`	Pfam	`PF00753`	Lactamase_B	Domain	91	246	1.5e-23	84.5	Metallo-beta-lactamase superfamily
`XP_057781535.1`	Pfam	`PF16123`	HAGH_C	Family	247	331	2.1e-25	89.6	Hydroxyacylglutathione hydrolase C-terminus
`XP_057781536.1`	Pfam	`PF00753`	Lactamase_B	Domain	90	245	1.5e-23	84.5	Metallo-beta-lactamase superfamily
`XP_057781536.1`	Pfam	`PF16123`	HAGH_C	Family	246	330	2.1e-25	89.6	Hydroxyacylglutathione hydrolase C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057925553.1
TAAGTATTCTATTTTCAACTTTCTAAAACATATAAGCATTTTTAAATTTTGTTAAGTCTCATGCTTATTTACTTCTTTTGCATTTTTTAGACTTATAAAATTCCAAAGAAATTAATTAAATAAGAGGAGACCAAAATTTTAAAATACAGTTGTAGTAAGTAGGTGGACAACAAAGTCCCACAGCTGTCAAAGTTAATAAAGAAACCCCACACTATCGTGTTATTCGATGCATATTGAAATTCATTTGCACGTATTTTCTT...

XM_057925552.1
TAAGTATTCTATTTTCAACTTTCTAAAACATATAAGCATTTTTAAATTTTGTTAAGTCTCATGCTTATTTACTTCTTTTGCATTTTTTAGACTTATAAAATTCCAAAGAAATTAATTAAATAAGAGGAGACCAAAATTTTAAAATACAGTTGTAGTAAGTAGGTGGACAACAAAGTCCCACAGCTGTCAAAGTTAATAAAGAAACCCCACACTATCGTGTTATTCGATGCATATTGAAATTCATTTGCACGTATTTTCTT...

CDS

2 records

下载 CDS FASTA

LOC130999870
ATGCAGATGATCCTCTGTAGAGCTGCGCCAAAGGCCATGGCTTCCTTCCCCCGCTCCAGGCCTAGGGAGCTATGTGTATGGCCCGGAATGGGACAGCTTTGCCTAAGAAAGAATCTTTTGTATGGGTTTATGAGGCTTTTTTCAATGCCATTCAAAACCCTACGCAGTGTTAGCCGGACAGTTGGAGGGGTCTCACATTTTTGCAGTATCACAAATATGTCAAACAGTTTGCAAATTGAACTGGTACCATGCCTTCGAGA...

LOC130999870
ATGCAGATGATCCTCTGTAGAGCTGCGCCAAAGGCCATGGCTTCCTTCCCCCGCTCCAGGCCTAGGAAGGAGCTATGTGTATGGCCCGGAATGGGACAGCTTTGCCTAAGAAAGAATCTTTTGTATGGGTTTATGAGGCTTTTTTCAATGCCATTCAAAACCCTACGCAGTGTTAGCCGGACAGTTGGAGGGGTCTCACATTTTTGCAGTATCACAAATATGTCAAACAGTTTGCAAATTGAACTGGTACCATGCCTTCG...

Protein

2 records

下载 Protein FASTA

XP_057781535.1
MQMILCRAAPKAMASFPRSRPRKELCVWPGMGQLCLRKNLLYGFMRLFSMPFKTLRSVSRTVGGVSHFCSITNMSNSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAIPIIDALNRKNWNLNYILNTHHHYDHTGGNLDLKERYGAKVIGSGVDKERIPGIDIALNDGDKWKFASHEVLVMETPGHTKGHISFYFPGSKSIFTGDTLFSLSCGKLFEGTPEQMLSSLRKIVALPDDTSIYCGHEYTLSNSKFALSIE...

XP_057781536.1
MQMILCRAAPKAMASFPRSRPRELCVWPGMGQLCLRKNLLYGFMRLFSMPFKTLRSVSRTVGGVSHFCSITNMSNSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAIPIIDALNRKNWNLNYILNTHHHYDHTGGNLDLKERYGAKVIGSGVDKERIPGIDIALNDGDKWKFASHEVLVMETPGHTKGHISFYFPGSKSIFTGDTLFSLSCGKLFEGTPEQMLSSLRKIVALPDDTSIYCGHEYTLSNSKFALSIEP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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