当前解析结果
SmilChr01G005138| 统一新 Gene ID | SmilChr01G005138 |
|---|---|
| 名称 | SmilChr01G005138 |
| 描述 | purple acid phosphatase 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 69164447 - 69168079 / - |
| NCBI Gene ID | LOC131005470 |
|---|---|
| GeneID | 131005470 |
| locus_tag | - |
| NCBI Name | LOC131005470 |
| 原始查询 | LOC131005470 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | purple acid phosphatase 2-like |
| 产物 | purple acid phosphatase 2-like |
| Arabidopsis | AT2G16430 (PAP10)purple acid phosphatase 10 [Source:NCBI gene (formerly Entrezgene);Acc:816141] identity=75.1; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0776600 (OsPAP10a)- identity=73.2; qcov=0.985; evalue=0; confidence=high |
| GO | GO:0003993 (acid phosphatase activity); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00149 (Metallophos); PF14008 (Metallophos_C); PF16656 (Pur_ac_phosph_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005470 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.60000 | XP_057788450.1 |
| 2 | Lysosome | 溶酶体 | 0.20000 | XP_057788450.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057788450.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057788450.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057788450.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:69164676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:69164750 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B108,B119,C23 |
Chr1:69164804 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr1:69165085 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B110,B124,C19,C61,C78 |
Chr1:69165471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,C2,C8 |
Chr1:69165905 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A10,B23 |
Chr1:69165906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B109,B13,C1,D10 |
Chr1:69165912 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,C48,D6 |
Chr1:69165995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr1:69166017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B139,B90,B92 |
Chr1:69166479 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B94,C16 |
Chr1:69166501 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B139,B90,B92 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057788450.1PF16656
Pur_ac_phosph_N 58-149 aa
PF00149
Metallophos 160-358 aa
PF14008
Metallophos_C 384-443 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788450.1 |
Pfam | PF16656 |
Pur_ac_phosph_N | Domain | 58 | 149 | 1.6e-20 | 74.2 | Purple acid Phosphatase, N-terminal domain |
XP_057788450.1 |
Pfam | PF00149 |
Metallophos | Domain | 160 | 358 | 7.5e-27 | 95.8 | Calcineurin-like phosphoesterase |
XP_057788450.1 |
Pfam | PF14008 |
Metallophos_C | Domain | 384 | 443 | 2.3e-21 | 76.9 | Iron/zinc purple acid phosphatase-like protein C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。