当前解析结果
SmilChr01G005584| 统一新 Gene ID | SmilChr01G005584 |
|---|---|
| 名称 | SmilChr01G005584 |
| 描述 | 17.9 kDa class II heat shock protein-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 72528545 - 72529494 / + |
| NCBI Gene ID | LOC131005967 |
|---|---|
| GeneID | 131005967 |
| locus_tag | - |
| NCBI Name | LOC131005967 |
| 原始查询 | LOC131005967 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 17.9 kDa class II heat shock protein-like |
| 产物 | 17.9 kDa class II heat shock protein-like |
| Arabidopsis | AT1G53540 (AT1G53540)HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841789] identity=62.7; qcov=0.379; evalue=4.38e-39; confidence=low |
| Rice | Os03g0266300 (Oshsp17.9A)- identity=57.5; qcov=0.414; evalue=1.3e-38; confidence=low |
| GO | GO:0006457 (protein folding); GO:0009408 (response to heat); GO:0009651 (response to salt stress); GO:0042542 (response to hydrogen peroxide); GO:0043621 (GO:0043621); GO:0051082 (GO:0051082); GO:0051259 (protein complex oligomerization) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00011 (HSP20); PF01107 (MP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057789081.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057789081.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789081.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789081.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789081.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:72528580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr1:72528581 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr1:72528833 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,C45,D5 |
Chr1:72528979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B25,B41 |
Chr1:72529094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr1:72529134 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B137,B51 |
Chr1:72529134 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B137,B51 |
Chr1:72529246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B37,C2 |
Chr1:72529247 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B37,C2 |
Chr1:72529251 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:72529258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B108,B33,C16,C23 |
Chr1:72529262 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B37,C2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789081.1PF01107
MP 34-110 aa
PF00011
HSP20 187-289 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789081.1 |
Pfam | PF01107 |
MP | Family | 34 | 110 | 2.3e-06 | 28.1 | Viral movement protein (MP) |
XP_057789081.1 |
Pfam | PF00011 |
HSP20 | Domain | 187 | 289 | 5.7e-28 | 97.7 | Hsp20/alpha crystallin family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。