Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G000095`

Chromosome: Chr01 Coordinates: 1694350-1696209 Strand: - Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G000095`
Name	SmilChr01G000095
Description	uncharacterized SmilChr01G000095
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	1694350 - 1696209 / `-`

ID Mapping

NCBI Gene ID	`LOC131007150`
GeneID	`131007150`
locus_tag	`-`
NCBI Name	`LOC131007150`
Original query	`LOC131007150`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828237]; symbol=AT4G21520; hit=AT4G21520; species=arabidopsis; confidence=high
Product	Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828237]; symbol=AT4G21520; hit=AT4G21520; species=arabidopsis; confidence=high
Arabidopsis	`AT4G21520` (AT4G21520) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828237] identity=80.1; qcov=0.664; evalue=1.66e-98; confidence=high
Rice	`Os03g0738000` (OsWD40-88) - identity=78.9; qcov=0.664; evalue=2.9e-91; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00400 (WD40)
InterPro	-
eggNOG	-
NR	GeneID:131007150

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790293.1`
2	Cytoplasm	细胞质	1.00000	`XP_057790293.1`
3	Chromosome	染色体	0.00000	`XP_057790293.1`
4	Centromere	着丝粒	0.00000	`XP_057790293.1`
5	Chromatin	染色质	0.00000	`XP_057790293.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr1:1694351`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:1694367`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,A19,B127,B23,B58
`Chr1:1694390`	`T`	`TC`	1bp_insertion	frameshift_variant	10	A1,A20,A3,B119,B45,B54,B72,B82,C11,C78
`Chr1:1694628`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr1:1694636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr1:1694805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C68,D10
`Chr1:1694940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr1:1695244`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C51,C74
`Chr1:1695266`	`TA`	`T`	1bp_deletion	frameshift_variant	1	C46
`Chr1:1695266`	`TA`	`T`	1bp_deletion	CDS_variant	1	C46
`Chr1:1695363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr1:1695373`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B25,C41,C84

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057790293.1

250 aa

125

250

WD40

PF00400 WD40 70-108 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057790293.1`	Pfam	`PF00400`	WD40	Repeat	70	108	3.1e-13	50.3	WD domain, G-beta repeat

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057934310.1
GGGTATTTTTTCTACAGAGTATCTTGTGATTAAGTAGATTATCATGTAGATTTATTGACGCGTGCTTGATAATTTCTGATCATGATATTTGCTGGATACAATAAAGCTATCAGAATTTTTGAGGTTCATCGCCCAGGGAGAGATTTTGAACAACACTCGACTGTTTTAGGAAACAAAGAAGGCCAATCAGGTATTATATCTTCTATTGCTTTTTCCCCCACTTCTTCTGGTATGCTGGCTGTGGGCTCCTACAACCAGAC...

CDS

1 records

Download CDS FASTA

LOC131007150
ATGATATTTGCTGGATACAATAAAGCTATCAGAATTTTTGAGGTTCATCGCCCAGGGAGAGATTTTGAACAACACTCGACTGTTTTAGGAAACAAAGAAGGCCAATCAGGTATTATATCTTCTATTGCTTTTTCCCCCACTTCTTCTGGTATGCTGGCTGTGGGCTCCTACAACCAGACTACTGCTATATACAGAGAAGACAATATGGAACTGCTGTATGTGTTGCATGGCCAAGAAGGTGGGGTTACACAAGTTCAGTT...

Protein

1 records

Download Protein FASTA

XP_057790293.1
MIFAGYNKAIRIFEVHRPGRDFEQHSTVLGNKEGQSGIISSIAFSPTSSGMLAVGSYNQTTAIYREDNMELLYVLHGQEGGVTQVQFSKDGNYLYSGGRKDPYILCWDIRKTVDIVYKLYRSSESTNQRIQFAIEPLGRYLGTGGQDGLVHIYDLQTGEWVSSFQAALGSLILLFIPVCLIRKIIFLRFLVGEGAHMWVKSKGIATDGTIEDADEWLVNFERAQAEIAKIRELDDDEDENTDTSAENFGD

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

Download upstream Download downstream Download upstream + gene + downstream

JBrowse

Open genome browser