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Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.
Examples

Resolved gene

SmilChr01G000034

Chromosome: Chr01 Coordinates: 564230-565217 Strand: + Biotype: lncRNA

Basic Information

Standard Gene IDSmilChr01G000034
NameSmilChr01G000034
Descriptionuncharacterized SmilChr01G000034
Chromosome / SeqIDChr01 / NC_080387.1
Coordinates and Strand564230 - 565217 / +

ID Mapping

NCBI Gene IDLOC131007193
GeneID131007193
locus_tag-
NCBI NameLOC131007193
Original queryLOC131007193

Open ID mapping

Functional Annotation

SourceGFF basic annotation
Descriptionuncharacterized SmilChr01G000034
Productuncharacterized SmilChr01G000034
Arabidopsis-
-
Rice-
-
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131007193

Open annotation module

Subcellular Localization Top 5

Subcellular localization is still building, or no prediction is available for this gene yet.

Open subcellular search

EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

Open domain search

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA
XR_009095953.1
AGGCTTTGTGACCAGGGAGATTAGCGCTGTTTTCCCAAGACAGGTTTATATGTGATTATGATCTTCAGGCTTTGCCTATCCAGGTTGGCTGGCCGGTGCTGACGGGACGGAGCTGAGGCTAGCGATAAATTCCTATGTTAGACTTCCGCTGTAGCAATTACTCATATCAGTCTTTTGTTTTCCCAACTTAAGATCTTCATGTTAAATTTCAAATGATATACCTGACCGAGCTTAGACTCTTCACTACTTAATTTATGCAA...

CDS

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Protein

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

Download upstream Download downstream Download upstream + gene + downstream

JBrowse

Open genome browser