Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000188`

染色体: Chr01 坐标: 3223441-3230307 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000188`
名称	SmilChr01G000188
描述	sucrose synthase 3-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	3223441 - 3230307 / `-`

ID 对照

NCBI Gene ID	`LOC131007293`
GeneID	`131007293`
locus_tag	`-`
NCBI Name	`LOC131007293`
原始查询	`LOC131007293`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sucrose synthase 3-like
产物	sucrose synthase 3-like
Arabidopsis	`AT4G02280` (SUS3) sucrose synthase 3 [Source:NCBI gene (formerly Entrezgene);Acc:828081] identity=78.6; qcov=0.991; evalue=0; confidence=high
Rice	`Os03g0340500` (SUS4) - identity=78.8; qcov=0.995; evalue=0; confidence=high
GO	GO:0005985 (sucrose metabolic process); GO:0016157 (sucrose synthase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00534 (Glycos_transf_1); PF00862 (GT-B_Sucrose_synth); PF13692 (Glyco_trans_1_4); PF24861 (SUS_N); PF24862 (SUS_EPBD)
InterPro	-
eggNOG	-
NR	GeneID:131007293

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057790418.1`
2	Cytoplasm	细胞质	0.80000	`XP_057790418.1`
3	Nucleus	细胞核	0.00000	`XP_057790418.1`
4	Chromosome	染色体	0.00000	`XP_057790418.1`
5	Centromere	着丝粒	0.00000	`XP_057790418.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:3224045`	`G`	`GAA`	2bp_insertion	frameshift_variant	50	A13,A14,A16,A22,A7,A8,B100,B108,B111,B112,B115,B119,B122,B126,B128,B13,B134,B136,B15,B16,B18,B27,B48,B5,B52,B60,B63,B7,B73,B76,B8,B81,B84,B97,B98,C1,C19,C36,C40,C41,C43,C47,C49,C59,C69,C9,D1,D2,D6,D9
`Chr1:3224409`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:3224777`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:3225218`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:3226128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B129,B17,B2,C4
`Chr1:3226741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B56,B96,C8,D6
`Chr1:3226793`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:3226801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:3227909`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr1:3228221`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,C48
`Chr1:3228227`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B124,D5
`Chr1:3228551`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790418.1

814 aa

407

814

SUS_N

SUS_EPBD

GT-B_Sucrose_synth

Glycos_transf_1

Glyco_trans_1_4

PF24861 SUS_N 10-122 aa PF24862 SUS_EPBD 157-244 aa PF00862 GT-B_Sucrose_synth 267-554 aa PF00534 Glycos_transf_1 566-728 aa PF13692 Glyco_trans_1_4 573-719 aa

XP_057790419.1

811 aa

406

811

SUS_N

SUS_EPBD

GT-B_Sucrose_synth

Glycos_transf_1

Glyco_trans_1_4

PF24861 SUS_N 10-122 aa PF24862 SUS_EPBD 157-244 aa PF00862 GT-B_Sucrose_synth 267-554 aa PF00534 Glycos_transf_1 566-728 aa PF13692 Glyco_trans_1_4 573-719 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790418.1`	Pfam	`PF24861`	SUS_N	Domain	10	122	6.2e-48	162.4	Sucrose synthase N-terminal
`XP_057790418.1`	Pfam	`PF24862`	SUS_EPBD	Domain	157	244	3.5e-33	114.6	Sucrose synthase EPBD domain
`XP_057790418.1`	Pfam	`PF00862`	GT-B_Sucrose_synth	Domain	267	554	1.6e-167	556.3	Sucrose synthase first GT-B domain
`XP_057790418.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	566	728	1.8e-24	86.9	Glycosyl transferases group 1
`XP_057790418.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	573	719	1.6e-10	42.1	Glycosyl transferases group 1
`XP_057790419.1`	Pfam	`PF24861`	SUS_N	Domain	10	122	6.1e-48	162.5	Sucrose synthase N-terminal
`XP_057790419.1`	Pfam	`PF24862`	SUS_EPBD	Domain	157	244	3.4e-33	114.6	Sucrose synthase EPBD domain
`XP_057790419.1`	Pfam	`PF00862`	GT-B_Sucrose_synth	Domain	267	554	1.6e-167	556.4	Sucrose synthase first GT-B domain
`XP_057790419.1`	Pfam	`PF00534`	Glycos_transf_1	Domain	566	728	1.8e-24	86.9	Glycosyl transferases group 1
`XP_057790419.1`	Pfam	`PF13692`	Glyco_trans_1_4	Domain	573	719	1.6e-10	42.1	Glycosyl transferases group 1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934436.1
AATATAACTCGAAATATTCCAAAAATTCTGTTTTAGAAACTACGTGGTTGTATTTAATTAACCCACACGGCTTCAGTGTAATCCATCAACTGCCACCTTTTCTCTCTCCCTCTCTCCTCCCTCTCTCAGCTCTCTGTCCAGTCCTGTGCTGTGCTGTACATATTGAATCAGCATCACTCCGATTCTCTCGCGTTTGATTTTCAAGTTCCAATCCCCAGAAATAGGAGAAATTTAGGTCAGAAATTTGTAATTATTCGGTA...

XM_057934435.1
AGAAACTACGTGGTTGTATTTAATTAACCCACACGGCTTCAGTGTAATCCATCAACTGCCACCTTTTCTCTCTCCCTCTCTCCTCCCTCTCTCAGCTCTCTGTCCAGTCCTGTGCTGTGCTGTACATATTGAATCAGCATCACTCCGATTCTCTCGCGTTTGATTTTCAAGTTCCAATCCCCAGAAATAGGAGAAATTTAGGTCAGAAATTTGTAATTATTCGGTATACACTTGAGATCTCAATGGGGAAGCCGAGATTA...

CDS

2 records

下载 CDS FASTA

LOC131007293
ATGGGGAAGCCGAGATTACAGAAATTGCCCAGCATGAGAGAAAGGGTTGAAGACACTCTTTCCGCTCACAGAAACGAACTCGTCGCTCTCCTTTCCCGATATGTGGCTCAGGGGAAGAGTATACTTCAGCCCCATCACCTAATTGACGAGCTCGAAAACATCATCTGCGTTGATTCTGCCAAGAATACTCTATGTGATGGCCCTTTCAGTGAAGTTTTGAAGTCTGCTCAAGAAGCTATCGTATTACCACCTTTTGTTGC...

Protein

2 records

下载 Protein FASTA

XP_057790418.1
MGKPRLQKLPSMRERVEDTLSAHRNELVALLSRYVAQGKSILQPHHLIDELENIICVDSAKNTLCDGPFSEVLKSAQEAIVLPPFVAIAIRPRPGVWEFVRVNVYELSVEELKVSEYLRFKEDLVDGQKDDPYLLELDFEPFNSSFPRPSRSSSIGNGVQFLNRHLSSIMFRNKDSLEPLLDFLRVHRHKGHVLMLNDRIERISQLESALAKAEDYVCKLPPETPYSELEFALQGMGFERGWGDTAERVVQMMHLLSDIL...

XP_057790419.1
MGKPRLQKLPSMRERVEDTLSAHRNELVALLSRYVAQGKSILQPHHLIDELENIICVDSAKNTLCDGPFSEVLKSAQEAIVLPPFVAIAIRPRPGVWEFVRVNVYELSVEELKVSEYLRFKEDLVDGQKDDPYLLELDFEPFNSSFPRPSRSSSIGNGVQFLNRHLSSIMFRNKDSLEPLLDFLRVHRHKGHVLMLNDRIERISQLESALAKAEDYVCKLPPETPYSELEFALQGMGFERGWGDTAERVVQMMHLLSDIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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