Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005340`

染色体: Chr02 坐标: 74243664-74247429 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005340`
名称	SmilChr02G005340
描述	beta-amylase
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74243664 - 74247429 / `-`

ID 对照

NCBI Gene ID	`LOC131009208`
GeneID	`131009208`
locus_tag	`-`
NCBI Name	`LOC131009208`
原始查询	`LOC131009208`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	beta-amylase
产物	beta-amylase
Arabidopsis	`AT4G15210` (BAM5) beta-amylase 5 [Source:NCBI gene (formerly Entrezgene);Acc:827185] identity=52.1; qcov=0.864; evalue=7.51e-179; confidence=high
Rice	`Os07g0543100` - identity=51; qcov=0.901; evalue=8.64e-155; confidence=high
GO	GO:0000272 (polysaccharide catabolic process); GO:0016161 (beta-amylase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01373 (Glyco_hydro_14)
InterPro	-
eggNOG	-
NR	GeneID:131009208

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057792445.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057792445.1`
3	Cytosol	细胞质基质	0.60000	`XP_057792444.1`
4	Endoplasmic reticulum	内质网	0.20000	`XP_057792444.1`
5	Peroxisome	过氧化物酶体	0.20000	`XP_057792444.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74243869`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,B17
`Chr2:74243945`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B11
`Chr2:74243959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:74243968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B20,B98
`Chr2:74243977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B1,B20,B54,B98,C39
`Chr2:74244648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B104,B78,B90,B92,C77
`Chr2:74244660`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr2:74244666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,D10
`Chr2:74244681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B25,C20,C79
`Chr2:74244801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B32,B66,B74,B94
`Chr2:74244807`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C31
`Chr2:74244821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792444.1

459 aa

230

459

Glyco_hydro_14

PF01373 Glyco_hydro_14 1-393 aa

XP_057792445.1

575 aa

288

575

Glyco_hydro_14

PF01373 Glyco_hydro_14 219-509 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792444.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	1	393	1.2e-127	427.2	Glycosyl hydrolase family 14
`XP_057792445.1`	Pfam	`PF01373`	Glyco_hydro_14	Domain	219	509	2.2e-83	281.3	Glycosyl hydrolase family 14

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936462.1
GATTTTTCTTAAAAAAAAAAAAAAAAAAAACTTCATCAACTGCACTATAAATTCATGCAAGCTGCAGACCACTTCATCTCATCGTAAAAAATCGAAAAATCCTTAAAACTTTTTGTAATATTCTGTTTTAAGCTGTAATAATATATTATGGCAACCAGTGTTGTTGCTTCAAAAATAGTGAGATTTTTGCCGAAGAAAATGGCGTTCAACCAGCTGCAAGAGTTGCCTGATTCCGATTTGCAGAAGAATTTCGCGCTGAA...

XM_057936461.1
ATAAATTCATGCAAGCTGCAGACCACTTCATCTCATCGTAAAAAATCGAAAAATCCTTAAAACTTTTTGTAATATTCTGTTTTAAGCTGTAATAATATATTATGGCAACCAGTGTTGTTGCTTCAAAAATAGTGAGATTTTTGCCGAAGAAAATGGCGTTCAACCAGCTGCAAGAGTTGCCTGATTCCGATTTGCAGAAGAATTTCGCGCTGAAAATAAATGTGATTGAAAACCTCAAATCTAAGAGAGTTTATACCCCT...

CDS

2 records

下载 CDS FASTA

LOC131009208
ATGGCAACCAGTGTTGTTGCTTCAAAAATAGTGAGATTTTTGCCGAAGAAAATGGCGTTCAACCAGCTGCAAGAGTTGCCTGATTCCGATTTGCAGAAGAATTTCGCGCTGAAAATAAATGTGATTGAAAACCTCAAATCTAAGAGAGTTTATACCCCTCGGGCTGTCACGATCGATGCTCCTACGGAGAAAACATCTCAAAGCGTAAGCAACAGTCCTCTAGCAAACTACGTTCCACTCTTCGTGATGCTCCCTTTGGG...

LOC131009208
ATGGTCGACGTCTGGTGGGGTATCATTGAGGCCAAAGGCCCCAAACAATATGACTGGAATTCTTACAAGAAATTGTTCGATCTTGTGCAAAAATCCGGCCTCAGAATCCAGGCCATCATGTCGTTCCATCAGTGCGGCGGCAACATCGGCGACGCCGTCCACATTCCGATCCCGGAATGGGTCCTCGCCGTCGGAGAAGAAGATGAAGACATCTTCTACACCAACAGAGCCGGCATTAGGGACCCTGAGTACCTCTCTCT...

Protein

2 records

下载 Protein FASTA

XP_057792444.1
MVDVWWGIIEAKGPKQYDWNSYKKLFDLVQKSGLRIQAIMSFHQCGGNIGDAVHIPIPEWVLAVGEEDEDIFYTNRAGIRDPEYLSLGVDSLPIFRGRTAIEMYRDFMQSFKEAMAELLESGTIIDIEVGLGPAGEMRYPSYPQDQGWFFPGIGEFQCYDKYMKQDFAAAAAKVGHPEWDLPDDAGMYNDTPERTGFFRANGTYLSVKGKFFLTWYSNKLIEHGDQILDEANKVFQGCRVRLAIKVSGIHWWYTDDSHAC...

XP_057792445.1
MATSVVASKIVRFLPKKMAFNQLQELPDSDLQKNFALKINVIENLKSKRVYTPRAVTIDAPTEKTSQSVSNSPLANYVPLFVMLPLGVVTRENEFPDQEKMQRRLRELRNAGVDGVMVSWSTSGGVSLRPKAPNNMTGILTRNCSILCKNPASESRPSCRSISAAATSATPSTFRSRNGSSPSEKKMKTSSTPTEPALGTLSTSLLVLIASPSFGDERRSRDFMQSFKEAMAELLESGTIIDIEVGLGPAGEMRYPSYPQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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