当前解析结果
SmilChr02G004940| 统一新 Gene ID | SmilChr02G004940 |
|---|---|
| 名称 | SmilChr02G004940 |
| 描述 | uncharacterized SmilChr02G004940 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 71362767 - 71365907 / - |
| NCBI Gene ID | LOC131009950 |
|---|---|
| GeneID | 131009950 |
| locus_tag | - |
| NCBI Name | LOC131009950 |
| 原始查询 | LOC131009950 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G protein alpha subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:817170]; symbol=GP ALPHA 1; hit=AT2G26300; species=arabidopsis; confidence=low |
| 产物 | G protein alpha subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:817170]; symbol=GP ALPHA 1; hit=AT2G26300; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G26300 (GP ALPHA 1)G protein alpha subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:817170] identity=86.8; qcov=0.412; evalue=5.66e-70; confidence=low |
| Rice | Os05g0333200 (D1)- identity=81.4; qcov=0.408; evalue=7.08e-65; confidence=low |
| GO | GO:0001664 (G protein-coupled receptor binding); GO:0003924 (GTPase activity); GO:0005834 (heterotrimeric G-protein complex); GO:0007188 (adenylate cyclase-modulating G protein-coupled receptor signaling pathway); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding) |
| KEGG | - |
| Pfam | PF00503 (G-alpha) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009950 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057793330.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057793330.1 |
| 3 | Cytosol | 细胞质基质 | 0.80000 | XP_057793330.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793330.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793330.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:71362834 |
T |
TA |
1bp_insertion | frameshift_variant | 13 | B112,B131,B2,B23,B29,B3,B31,C23,C3,C32,C52,C61,C86 |
Chr2:71363073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr2:71363074 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C13,C28 |
Chr2:71363087 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr2:71363089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B102,B68,D10 |
Chr2:71363102 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B102,B26,B30,B58 |
Chr2:71363107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,C56,C65 |
Chr2:71363116 |
TA |
T |
1bp_deletion | frameshift_variant | 2 | B7,C60 |
Chr2:71363116 |
TA |
T |
1bp_deletion | CDS_variant | 2 | B7,C60 |
Chr2:71363169 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B111,B115,B76,B89 |
Chr2:71363175 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:71363177 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | C16,C32,C68 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793330.1PF00503
G-alpha 158-270 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793330.1 |
Pfam | PF00503 |
G-alpha | Domain | 158 | 270 | 4.9e-43 | 148.3 | G-protein alpha subunit |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。