当前解析结果
SmilChr02G002825| 统一新 Gene ID | SmilChr02G002825 |
|---|---|
| 名称 | SmilChr02G002825 |
| 描述 | N-glycosylase/DNA lyase OGG1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 48355393 - 48357723 / + |
| NCBI Gene ID | LOC131011852 |
|---|---|
| GeneID | 131011852 |
| locus_tag | - |
| NCBI Name | LOC131011852 |
| 原始查询 | LOC131011852 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | N-glycosylase/DNA lyase OGG1 |
| 产物 | N-glycosylase/DNA lyase OGG1 |
| Arabidopsis | AT1G21710 (OGG1)8-oxoguanine-DNA glycosylase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838775] identity=68.3; qcov=0.761; evalue=6.46e-152; confidence=high |
| Rice | Os02g0552600 (Ogg)- identity=57.7; qcov=0.784; evalue=1.03e-113; confidence=high |
| GO | GO:0003684 (damaged DNA binding); GO:0005634 (nucleus); GO:0006284 (base-excision repair); GO:0006285 (base-excision repair, AP site formation); GO:0006289 (nucleotide-excision repair); GO:0034039 (8-oxo-7,8-dihydroguanine DNA N-glycosylase activity) |
| KEGG | smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00730 (HhH-GPD); PF07934 (OGG_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011852 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057795710.1 |
| 2 | Nucleolus | 核仁 | 0.20000 | XP_057795710.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057795710.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057795710.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057795710.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:48355483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:48355590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr2:48355823 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B60 |
Chr2:48355837 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
Chr2:48355972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C39,D4 |
Chr2:48356080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,C5,D8 |
Chr2:48356117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:48356703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C30 |
Chr2:48356733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,C43,D9 |
Chr2:48356774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:48356880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:48357084 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795710.1PF07934
OGG_N 64-174 aa
PF00730
HhH-GPD 175-312 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795710.1 |
Pfam | PF07934 |
OGG_N | Family | 64 | 174 | 1.1e-23 | 84.3 | 8-oxoguanine DNA glycosylase, N-terminal domain |
XP_057795710.1 |
Pfam | PF00730 |
HhH-GPD | Domain | 175 | 312 | 3.8e-09 | 37.6 | HhH-GPD superfamily base excision DNA repair protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。