当前解析结果
SmilChr02G004357| 统一新 Gene ID | SmilChr02G004357 |
|---|---|
| 名称 | SmilChr02G004357 |
| 描述 | pollen receptor-like kinase 3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 65866063 - 65868588 / + |
| NCBI Gene ID | LOC131013103 |
|---|---|
| GeneID | 131013103 |
| locus_tag | - |
| NCBI Name | LOC131013103 |
| 原始查询 | LOC131013103 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pollen receptor-like kinase 3 |
| 产物 | pollen receptor-like kinase 3 |
| Arabidopsis | AT3G42880 (PRK3)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823335] identity=44.8; qcov=0.977; evalue=1.2e-178; confidence=medium |
| Rice | Os06g0198900 (OsRLCK202)- identity=39; qcov=0.997; evalue=1.69e-146; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013103 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057797098.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057797098.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057797098.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057797098.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057797098.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:65866684 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr2:65866943 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:65866961 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B32,B75 |
Chr2:65866961 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B32,B75 |
Chr2:65867107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr2:65867306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,B94,C74 |
Chr2:65867805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,C31,C7 |
Chr2:65867841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:65868094 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
Chr2:65868154 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B24,B37,C75,D1 |
Chr2:65868252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B44,B94,C74 |
Chr2:65868271 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B121,B72,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057797098.1PF08263
LRRNT_2 27-66 aa
PF00560
LRR_1 144-165 aa
PF00560
LRR_1 190-209 aa
PF00069
Pkinase 352-615 aa
PF07714
PK_Tyr_Ser-Thr 354-615 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797098.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 27 | 66 | 4.7e-08 | 33.9 | Leucine rich repeat N-terminal domain |
XP_057797098.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 144 | 165 | 8.9e-10 | 37.5 | Leucine Rich Repeat |
XP_057797098.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 190 | 209 | 8.9e-10 | 37.5 | Leucine Rich Repeat |
XP_057797098.1 |
Pfam | PF00069 |
Pkinase | Domain | 352 | 615 | 1.1e-28 | 101.1 | Protein kinase domain |
XP_057797098.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 354 | 615 | 2.6e-24 | 86.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。