当前解析结果
SmilChr02G002504| 统一新 Gene ID | SmilChr02G002504 |
|---|---|
| 名称 | SmilChr02G002504 |
| 描述 | 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 43533842 - 43537575 / + |
| NCBI Gene ID | LOC131013598 |
|---|---|
| GeneID | 131013598 |
| locus_tag | - |
| NCBI Name | LOC131013598 |
| 原始查询 | LOC131013598 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like |
| 产物 | 3-oxoacyl-[acyl-carrier-protein] synthase I%2C chloroplastic-like |
| Arabidopsis | AT5G46290 (KASI)3-ketoacyl-acyl carrier protein synthase I [Source:NCBI gene (formerly Entrezgene);Acc:834671] identity=84.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0445700- identity=82.8; qcov=0.929; evalue=0; confidence=high |
| GO | GO:0004315 (3-oxoacyl-[acyl-carrier-protein] synthase activity); GO:0006633 (fatty acid biosynthetic process) |
| KEGG | smil00061 (Fatty acid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00780 (Biotin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00109 (ketoacyl-synt); PF02801 (Ketoacyl-synt_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131013598 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057797705.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057797705.1 |
| 3 | Mitochondrion | 线粒体 | 0.20000 | XP_057797705.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057797705.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057797705.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:43534125 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B3 |
Chr2:43534144 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr2:43534179 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C49 |
Chr2:43534179 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C49 |
Chr2:43534204 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,C27,C43 |
Chr2:43534234 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C63 |
Chr2:43534234 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C63 |
Chr2:43534337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057797705.1PF00109
ketoacyl-synt 56-302 aa
PF02801
Ketoacyl-synt_C 311-422 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057797705.1 |
Pfam | PF00109 |
ketoacyl-synt | Domain | 56 | 302 | 8.3e-58 | 196.7 | Beta-ketoacyl synthase, N-terminal domain |
XP_057797705.1 |
Pfam | PF02801 |
Ketoacyl-synt_C | Domain | 311 | 422 | 3.4e-35 | 121.3 | Beta-ketoacyl synthase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。