当前解析结果
SmilChr03G003800| 统一新 Gene ID | SmilChr03G003800 |
|---|---|
| 名称 | SmilChr03G003800 |
| 描述 | probable receptor-like protein kinase At5g20050 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57060998 - 57076442 / - |
| NCBI Gene ID | LOC131014647 |
|---|---|
| GeneID | 131014647 |
| locus_tag | - |
| NCBI Name | LOC131014647 |
| 原始查询 | LOC131014647 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable receptor-like protein kinase At5g20050 |
| 产物 | probable receptor-like protein kinase At5g20050 |
| Arabidopsis | AT5G38280 (PR5K)PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=51.1; qcov=0.451; evalue=7.06e-105; confidence=medium |
| Rice | Os01g0116400- identity=37.2; qcov=0.972; evalue=2.51e-132; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014647 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798673.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798673.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798673.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798673.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798673.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57061193 |
G |
A |
EMS_canonical_SNV | stop_gained | 19 | A18,A9,B102,B105,B109,B12,B123,B131,B132,B27,B53,B55,B58,B99,C14,C29,C31,C44,C51 |
Chr3:57061218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr3:57061258 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B135,C38,C50 |
Chr3:57061276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,C27,C52 |
Chr3:57061322 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr3:57061324 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C8 |
Chr3:57061329 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,C59,D8 |
Chr3:57061348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C22,C41 |
Chr3:57061436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr3:57061439 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B138 |
Chr3:57061466 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B46 |
Chr3:57061516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798673.1PF13947
GUB_WAK_bind 31-94 aa
PF07714
PK_Tyr_Ser-Thr 350-623 aa
PF00069
Pkinase 351-621 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798673.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 31 | 94 | 4.9e-16 | 59.6 | Wall-associated receptor kinase galacturonan-binding |
XP_057798673.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 350 | 623 | 1.3e-44 | 153.1 | Protein tyrosine and serine/threonine kinase |
XP_057798673.1 |
Pfam | PF00069 |
Pkinase | Domain | 351 | 621 | 3.3e-43 | 148.7 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。