当前解析结果
SmilChr03G004470| 统一新 Gene ID | SmilChr03G004470 |
|---|---|
| 名称 | SmilChr03G004470 |
| 描述 | wall-associated receptor kinase-like 1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 62795353 - 62799350 / + |
| NCBI Gene ID | LOC131015321 |
|---|---|
| GeneID | 131015321 |
| locus_tag | - |
| NCBI Name | LOC131015321 |
| 原始查询 | LOC131015321 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wall-associated receptor kinase-like 1 |
| 产物 | wall-associated receptor kinase-like 1 |
| Arabidopsis | AT1G16120 (WAKL1)wall associated kinase-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:838181] identity=51.2; qcov=0.904; evalue=9.63e-96; confidence=high |
| Rice | Os04g0307900- identity=46.5; qcov=0.854; evalue=3.34e-83; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0007166 (cell surface receptor signaling pathway) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131015321 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057799658.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057799658.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057799658.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057799658.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057799658.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:62795537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B121,B36 |
Chr3:62795551 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B57,C50 |
Chr3:62795585 |
C |
T |
EMS_canonical_SNV | stop_gained | 15 | B105,B130,B138,B17,B2,B53,B62,B63,B71,B8,C25,C30,C5,C71,C84 |
Chr3:62795679 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B115,B70,C61 |
Chr3:62795755 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B122,B24 |
Chr3:62795755 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B122,B24 |
Chr3:62795796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B36,C60,C87 |
Chr3:62795851 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:62795910 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,B57,C24 |
Chr3:62795967 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B44,B7,D6 |
Chr3:62795970 |
G |
A |
EMS_canonical_SNV | stop_gained | 6 | A21,A24,B115,B70,B91,C61 |
Chr3:62795994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B19 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057799658.1PF00069
Pkinase 4-248 aa
PF07714
PK_Tyr_Ser-Thr 6-251 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057799658.1 |
Pfam | PF00069 |
Pkinase | Domain | 4 | 248 | 2.3e-44 | 152.5 | Protein kinase domain |
XP_057799658.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 6 | 251 | 2.7e-45 | 155.4 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。