当前解析结果
SmilChr03G001290| 统一新 Gene ID | SmilChr03G001290 |
|---|---|
| 名称 | SmilChr03G001290 |
| 描述 | probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 15120070 - 15122155 / + |
| NCBI Gene ID | LOC131017796 |
|---|---|
| GeneID | 131017796 |
| locus_tag | - |
| NCBI Name | LOC131017796 |
| 原始查询 | LOC131017796 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial |
| 产物 | probable phosphoribosylformylglycinamidine synthase%2C chloroplastic/mitochondrial |
| Arabidopsis | AT1G74260 (PUR4)purine biosynthesis 4 [Source:NCBI gene (formerly Entrezgene);Acc:843766] identity=66.7; qcov=1.02; evalue=1.53e-147; confidence=high |
| Rice | Os01g0888500- identity=68.8; qcov=1.02; evalue=9.23e-157; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF02769 (AIRS_C); PF13507 (GATase_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131017796 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057802504.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057802504.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057802504.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057802504.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057802504.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:15120646 |
CA |
C |
1bp_deletion | frameshift_variant | 5 | B111,B12,B68,B85,D2 |
Chr3:15120646 |
CA |
C |
1bp_deletion | CDS_variant | 5 | B111,B12,B68,B85,D2 |
Chr3:15120740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B31 |
Chr3:15120755 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B65,C44,C56 |
Chr3:15120765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B111,B12,B85,D2 |
Chr3:15120893 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr3:15120900 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C4,C64,C66 |
Chr3:15120938 |
G |
GA |
1bp_insertion | frameshift_variant | 3 | B139,B33,B87 |
Chr3:15120938 |
G |
GA |
1bp_insertion | CDS_variant | 3 | B139,B33,B87 |
Chr3:15120983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B40,B5,B57 |
Chr3:15121032 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C32 |
Chr3:15121327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,B29,B76,B79,C43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057802504.1PF02769
AIRS_C 1-69 aa
PF13507
GATase_5 139-315 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057802504.1 |
Pfam | PF02769 |
AIRS_C | Domain | 1 | 69 | 2e-05 | 25.6 | AIR synthase related protein, C-terminal domain |
XP_057802504.1 |
Pfam | PF13507 |
GATase_5 | Domain | 139 | 315 | 1.9e-57 | 195.0 | CobB/CobQ-like glutamine amidotransferase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。