Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003308`

染色体: Chr04 坐标: 49818558-49827362 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003308`
名称	SmilChr04G003308
描述	V-type proton ATPase subunit C-like
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	49818558 - 49827362 / `+`

ID 对照

NCBI Gene ID	`LOC131020206`
GeneID	`131020206`
locus_tag	`-`
NCBI Name	`LOC131020206`
原始查询	`LOC131020206`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	V-type proton ATPase subunit C-like
产物	V-type proton ATPase subunit C-like
Arabidopsis	`AT1G12840` (DET3) vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) [Source:NCBI gene (formerly Entrezgene);Acc:837840] identity=77.2; qcov=1; evalue=0; confidence=high
Rice	`Os05g0593100` - identity=75.9; qcov=1; evalue=0; confidence=high
GO	GO:0000221 (vacuolar proton-transporting V-type ATPase, V1 domain); GO:0046961 (proton-transporting ATPase activity, rotational mechanism); GO:1902600 (proton transmembrane transport)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03223 (V-ATPase_C)
InterPro	-
eggNOG	-
NR	GeneID:131020206

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vesicle	囊泡	0.80000	`XP_057804886.1`
2	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057804886.1`
3	Endocytic vesicle	Endocytic vesicle	0.60000	`XP_057804886.1`
4	Clathrin-coated vesicle	Clathrin-coated vesicle	0.60000	`XP_057804886.1`
5	Cytosol	细胞质基质	0.60000	`XP_057804886.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:49818893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B114,B20,C32,C68
`Chr4:49824151`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr4:49826460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,B91,C11,C42,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057804886.1

377 aa

188

377

V-ATPase_C

PF03223 V-ATPase_C 5-370 aa

XP_057804887.1

377 aa

188

377

V-ATPase_C

PF03223 V-ATPase_C 5-370 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057804886.1`	Pfam	`PF03223`	V-ATPase_C	Family	5	370	1.7e-126	423.3	V-ATPase subunit C
`XP_057804887.1`	Pfam	`PF03223`	V-ATPase_C	Family	5	370	1.7e-126	423.3	V-ATPase subunit C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057948903.1
ATGAAGGACTTAATTGCGATAACAAGAGAAAGCAAAAAGTGAGCTGAAGGAGATCGGAAAAAGGCATATGAATAAGCAAACAGGTTAATGGTTAGATAGTGATTCGTTATAAGACGAAGAGGAATCAGTGGAAGCAGGAGCAAATCTACTAAACCAACATCAATCATCACCTCCGACGCCATTATTGTTATCTTCTTAATCCTCACCAAAATATCGGTAAACATCTCTCTGAGAATATTCGATCGAATCGCTCGATCAAT...

XM_057948904.1
ATGAAGGACTTAATTGCGATAACAAGAGAAAGCAAAAAGTGAGCTGAAGGAGATCGGAAAAAGGCATATGAATAAGCAAACAGGTTAATGGTTAGATAGTGATTCGTTATAAGACGAAGAGGAATCAGTGGAAGCAGGAGCAAATCTACTAAACCAACATCAATCATCACCTCCGACGCCATTATTGTTATCTTCTTAATCCTCACCAAAATATCGGTAAACATCTCTCTGAGAATATTCGATCGAATCGCTCGATCAAT...

CDS

2 records

下载 CDS FASTA

LOC131020206
ATGGCGACACGTTACTGGGTGGCGTCTCTCCCCGTCGGTCAAGGCGGCTCCTCCTCGTCCGTATGGAGTCGTCTTCAGGAATCCATCTCCAAACAAGCCTTCGACACCTCTCTATACAGATTCAACATTCCAAATCTACGCGTTGGCACCCTGGATTTGCTTTTGGCTCTCAGCGACGACCTATCGAAGGCGAACAACTTCATTGAAGGAGTGTCGCACAAAATCCGGCGTCAGATTGAGGAATTGGAGAGGGTCTCGGG...

Protein

2 records

下载 Protein FASTA

XP_057804886.1
MATRYWVASLPVGQGGSSSSVWSRLQESISKQAFDTSLYRFNIPNLRVGTLDLLLALSDDLSKANNFIEGVSHKIRRQIEELERVSGVVSSSLTVDGVPVDSYLTRFMWDEAKYPTMSPLKEIVDGIHVQIAKIEDDLKVRVSEYSNVRSQLNAINRKQAGSLAVRDLSNLVKPEDVVSSEHLTTLLAVVSKYSQKDWLSSYETLTTYVVPRSSKKLHEDNEYALYTVTLFSRDADNFRTKARERSFQIRDFEYNTETQD...

XP_057804887.1
MATRYWVASLPVGQGGSSSSVWSRLQESISKQAFDTSLYRFNIPNLRVGTLDLLLALSDDLSKANNFIEGVSHKIRRQIEELERVSGVVSSSLTVDGVPVDSYLTRFMWDEAKYPTMSPLKEIVDGIHVQIAKIEDDLKVRVSEYSNVRSQLNAINRKQAGSLAVRDLSNLVKPEDVVSSEHLTTLLAVVSKYSQKDWLSSYETLTTYVVPRSSKKLHEDNEYALYTVTLFSRDADNFRTKARERSFQIRDFEYNTETQD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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