Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G003860`

染色体: Chr04 坐标: 54544578-54548140 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G003860`
名称	SmilChr04G003860
描述	pre-mRNA-splicing factor SPF27 homolog
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	54544578 - 54548140 / `-`

ID 对照

NCBI Gene ID	`LOC131020711`
GeneID	`131020711`
locus_tag	`-`
NCBI Name	`LOC131020711`
原始查询	`LOC131020711`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-mRNA-splicing factor SPF27 homolog
产物	pre-mRNA-splicing factor SPF27 homolog
Arabidopsis	`AT3G18165` (MOS4) modifier of snc1,4 [Source:NCBI gene (formerly Entrezgene);Acc:821343] identity=64.7; qcov=0.996; evalue=4.41e-114; confidence=high
Rice	`-` -
GO	GO:0000974 (Prp19 complex); GO:0006397 (mRNA processing); GO:0071011 (precatalytic spliceosome); GO:0071013 (catalytic step 2 spliceosome)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF05700 (BCAS2)
InterPro	-
eggNOG	-
NR	GeneID:131020711

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057805688.1`
2	Chromosome	染色体	1.00000	`XP_057805688.1`
3	Nucleoplasm	核质	0.80000	`XP_057805688.1`
4	Centromere	着丝粒	0.20000	`XP_057805688.1`
5	Cytoskeleton	细胞骨架	0.20000	`XP_057805688.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:54545228`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,B104,B58,C57,D1
`Chr4:54545492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B107,B7,C16,C33
`Chr4:54545940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B107,B7,C16,C33
`Chr4:54546233`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr4:54546248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A15
`Chr4:54546300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,C40
`Chr4:54547091`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:54547131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C14,C16,C45,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057805688.1

250 aa

125

250

BCAS2

PF05700 BCAS2 30-235 aa

XP_057805689.1

250 aa

125

250

BCAS2

PF05700 BCAS2 30-235 aa

XP_057805690.1

250 aa

125

250

BCAS2

PF05700 BCAS2 30-235 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057805688.1`	Pfam	`PF05700`	BCAS2	Family	30	235	3.3e-74	249.7	Breast carcinoma amplified sequence 2 (BCAS2)
`XP_057805689.1`	Pfam	`PF05700`	BCAS2	Family	30	235	3.3e-74	249.7	Breast carcinoma amplified sequence 2 (BCAS2)
`XP_057805690.1`	Pfam	`PF05700`	BCAS2	Family	30	235	3.3e-74	249.7	Breast carcinoma amplified sequence 2 (BCAS2)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009100738.1
TTTTTTTTTTTTTTTTTTTGAGAAGAGTATCTAAAATAGCATTTGATATAATTCTATATACTTTAATACTTAATAGTTTTTGTTCGACTTGACAACAGTAGAAATGTGACAATTTTCATTTTCTTCTAATCATAAATTACTGAAAGCTGTTCTGAAATTAACTCTTCAATAAAATAGTGTAAGCAGAAGATACAAGTTCAAGCCAACGCAGTTTCAAATTTGGATTAATTAGCAAAAATATCATAATGTTTCTATAATTT...

XR_009100737.1
TTTTTTTTTTTTTTTTTTTGAGAAGAGTATCTAAAATAGCATTTGATATAATTCTATATACTTTAATACTTAATAGTTTTTGTTCGACTTGACAACAGTAGAAATGTGACAATTTTCATTTTCTTCTAATCATAAATTACTGAAAGCTGTTCTGAAATTAACTCTTCAATAAAATAGTGTAAGCAGAAGATACAAGTTCAAGCCAACGCAGTTTCAAATTTGGATTAATTAGCAAAAATATCATAATGTTTCTATAATTT...

CDS

3 records

下载 CDS FASTA

LOC131020711
ATGGCGACTGCTAATGGAGGTAGTGCCGACATACTGATGCTGGAGGCGCCGCCGCAGTCGTCCACGGCCACGGCACCGGCGGCTCCAATAATTGATGCTTTGCCCTACATTGATGACGACTATGGCAACCCAAAGGTTAAAGAAGAAGTTGACCGATTGGTGGAAGAGGAGATGCGGTTCAGCTCGAAGAAACCTTCCGACTTCCTCAAAGACCTTCCCCCTCTCCCCACATTCAATTTTCAGGACCATCCTATGCTGGC...

Protein

3 records

下载 Protein FASTA

XP_057805688.1
MATANGGSADILMLEAPPQSSTATAPAAPIIDALPYIDDDYGNPKVKEEVDRLVEEEMRFSSKKPSDFLKDLPPLPTFNFQDHPMLAREYERVRAGKPPVQMDTSRYGLEVPPLNKRNDETAWRQALQKAQRLLQHQVIRLENLDLMLKHGPDVWKLYNQQLEAFLSRMQSQVLELNGNIESVNRERKYHQQNTAYELTALSAQWRELCLKNIEIESACAEIEAHIEALKREAGERGWNLEANIENGTIP

XP_057805689.1
MATANGGSADILMLEAPPQSSTATAPAAPIIDALPYIDDDYGNPKVKEEVDRLVEEEMRFSSKKPSDFLKDLPPLPTFNFQDHPMLAREYERVRAGKPPVQMDTSRYGLEVPPLNKRNDETAWRQALQKAQRLLQHQVIRLENLDLMLKHGPDVWKLYNQQLEAFLSRMQSQVLELNGNIESVNRERKYHQQNTAYELTALSAQWRELCLKNIEIESACAEIEAHIEALKREAGERGWNLEANIENGTIP

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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