当前解析结果
SmilChr01G001883| 统一新 Gene ID | SmilChr01G001883 |
|---|---|
| 名称 | SmilChr01G001883 |
| 描述 | borneol dehydrogenase, mitochondrial-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 33867728 - 33868929 / + |
| NCBI Gene ID | LOC131021554 |
|---|---|
| GeneID | 131021554 |
| locus_tag | - |
| NCBI Name | LOC131021554 |
| 原始查询 | LOC131021554 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | borneol dehydrogenase, mitochondrial-like |
| 产物 | borneol dehydrogenase%2C mitochondrial-like |
| Arabidopsis | AT1G52340 (ABA2)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841665] identity=52.4; qcov=1.01; evalue=2.3e-87; confidence=high |
| Rice | Os03g0810800 (OsABA2)- identity=54.1; qcov=0.996; evalue=2.67e-98; confidence=high |
| GO | GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | - |
| Pfam | PF00106 (adh_short); PF08659 (KR); PF13561 (adh_short_C2); PF23441 (SDR) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021554 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Peroxisome | 过氧化物酶体 | 1.00000 | XP_057806774.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057806774.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057806774.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057806774.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057806774.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:33868107 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B37,B99 |
Chr1:33868107 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B37,B99 |
Chr1:33868129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr1:33868231 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:33868237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A16,A8,B103,B11 |
Chr1:33868272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,C45,C62,C85 |
Chr1:33868285 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr1:33868318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr1:33868633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:33868759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:33868765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:33868828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057806774.1PF00106
adh_short 12-203 aa
PF23441
SDR 12-253 aa
PF08659
KR 14-166 aa
PF13561
adh_short_C2 18-253 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057806774.1 |
Pfam | PF00106 |
adh_short | Domain | 12 | 203 | 1.8e-54 | 184.9 | short chain dehydrogenase |
XP_057806774.1 |
Pfam | PF23441 |
SDR | Domain | 12 | 253 | 2.9e-06 | 27.6 | SDR-like rossmann domain |
XP_057806774.1 |
Pfam | PF08659 |
KR | Family | 14 | 166 | 4.4e-08 | 34.0 | KR domain |
XP_057806774.1 |
Pfam | PF13561 |
adh_short_C2 | Domain | 18 | 253 | 1.2e-66 | 225.4 | Enoyl-(Acyl carrier protein) reductase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。