当前解析结果
SmilChr04G002770| 统一新 Gene ID | SmilChr04G002770 |
|---|---|
| 名称 | SmilChr04G002770 |
| 描述 | receptor-like cytosolic serine/threonine-protein kinase RBK1 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 43493519 - 43498563 / - |
| NCBI Gene ID | LOC131021865 |
|---|---|
| GeneID | 131021865 |
| locus_tag | - |
| NCBI Name | LOC131021865 |
| 原始查询 | LOC131021865 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like cytosolic serine/threonine-protein kinase RBK1 |
| 产物 | receptor-like cytosolic serine/threonine-protein kinase RBK1 |
| Arabidopsis | AT5G65530 (AT5G65530)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836679] identity=60.1; qcov=0.938; evalue=0; confidence=high |
| Rice | Os06g0663900 (OsRLCK212)- identity=54; qcov=0.953; evalue=1.04e-156; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131021865 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057807170.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057807170.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057807170.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057807170.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057807170.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:43495445 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr4:43495869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,B117,C17 |
Chr4:43496211 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B112,B136,B44,C55 |
Chr4:43496473 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr4:43497731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr4:43497752 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr4:43497784 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | A6,B104,B54,C4,C42 |
Chr4:43497784 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B104,B54,C4,C42 |
Chr4:43497800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B104,B54,C4,C42 |
Chr4:43497964 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr4:43497979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057807170.1PF00069
Pkinase 155-418 aa
PF07714
PK_Tyr_Ser-Thr 156-420 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057807170.1 |
Pfam | PF00069 |
Pkinase | Domain | 155 | 418 | 1.1e-38 | 133.9 | Protein kinase domain |
XP_057807170.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 156 | 420 | 2.2e-41 | 142.6 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。