Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr04G002897`

染色体: Chr04 坐标: 45258118-45264582 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr04G002897`
名称	SmilChr04G002897
描述	autophagy protein 5
染色体 / SeqID	Chr04 / NC_080390.1
坐标与链方向	45258118 - 45264582 / `+`

ID 对照

NCBI Gene ID	`LOC131021982`
GeneID	`131021982`
locus_tag	`-`
NCBI Name	`LOC131021982`
原始查询	`LOC131021982`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	autophagy protein 5
产物	autophagy protein 5
Arabidopsis	`AT5G17290` (APG5) autophagy protein Apg5 family [Source:NCBI gene (formerly Entrezgene);Acc:831594] identity=60.2; qcov=0.983; evalue=3.67e-152; confidence=high
Rice	`Os02g0117800` (OsATG5) - identity=54.7; qcov=1.01; evalue=7.66e-126; confidence=high
GO	GO:0000045 (autophagosome assembly); GO:0000422 (autophagy of mitochondrion); GO:0005737 (cytoplasm); GO:0006501 (C-terminal protein lipidation); GO:0006995 (cellular response to nitrogen starvation); GO:0034045 (phagophore assembly site membrane); GO:0034274 (Atg12-Atg5-Atg16 complex); GO:0044804 (nucleophagy)
KEGG	smil04136 (Autophagy - other - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF04106 (ATG5_UblB); PF20637 (ATG5_HBR); PF20638 (ATG5_UblA)
InterPro	-
eggNOG	-
NR	GeneID:131021982

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057807298.1`
2	Cytoplasm	细胞质	0.80000	`XP_057807299.1`
3	Cytoplasmic vesicle	细胞质囊泡	0.60000	`XP_057807298.1`
4	Vesicle	囊泡	0.60000	`XP_057807298.1`
5	Autophagic vesicle	Autophagic vesicle	0.20000	`XP_057807298.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr4:45259276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B35,B42,B94,C65,D9
`Chr4:45259278`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B35,B42
`Chr4:45259320`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A24,B46
`Chr4:45259320`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A24,B46
`Chr4:45259328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr4:45261617`	`G`	`A`	EMS_canonical_SNV	stop_gained	13	A5,B101,B135,B28,B29,B30,B56,B71,B93,B96,C26,C38,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057807298.1

377 aa

188

377

ATG5_UblA

ATG5_HBR

ATG5_UblB

PF20638 ATG5_UblA 16-109 aa PF20637 ATG5_HBR 123-169 aa PF04106 ATG5_UblB 228-370 aa

XP_057807299.1

360 aa

180

360

ATG5_UblA

ATG5_HBR

ATG5_UblB

PF20638 ATG5_UblA 16-109 aa PF20637 ATG5_HBR 123-179 aa PF04106 ATG5_UblB 211-353 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057807298.1`	Pfam	`PF20638`	ATG5_UblA	Domain	16	109	4.7e-29	101.6	Autophagy protein ATG5, UblA domain
`XP_057807298.1`	Pfam	`PF20637`	ATG5_HBR	Domain	123	169	8.3e-19	67.9	Autophagy protein ATG5, alpha-helical bundle region
`XP_057807298.1`	Pfam	`PF04106`	ATG5_UblB	Domain	228	370	1.8e-16	61.2	Autophagy protein ATG5, UblB domain
`XP_057807299.1`	Pfam	`PF20638`	ATG5_UblA	Domain	16	109	4.6e-29	101.6	Autophagy protein ATG5, UblA domain
`XP_057807299.1`	Pfam	`PF20637`	ATG5_HBR	Domain	123	179	1.8e-21	76.4	Autophagy protein ATG5, alpha-helical bundle region
`XP_057807299.1`	Pfam	`PF04106`	ATG5_UblB	Domain	211	353	1.6e-16	61.4	Autophagy protein ATG5, UblB domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057951316.1
AAAAAAAAGAAAGAAGAAAACTGTTTCTTCACTCTTTCGACTTCCGGGAGACTGACTATTCGCAAATTGAGGTGAAGTAAAAACCCAGAAGCAGAAGAAAAAACGAAAAGAAAAAAGAAAAAGAAAAAAAGGGAATCTGCGATACCCGGTTTGAGGAATCCAATTCCGTCGGTGAGAGAAGAATGACAATGGACAGCAAAGGCGGAGGAATAGAGGCGCAACAGTACGTGTGGGGCGGTGCAATACCGCTTCAGATTCAT...

XM_057951315.1
AGAAGAAAACTGTTTCTTCACTCTTTCGACTTCCGGGAGACTGACTATTCGCAAATTGAGGTGAAGTAAAAACCCAGAAGCAGAAGAAAAAACGAAAAGAAAAAAGAAAAAGAAAAAAAGGGAATCTGCGATACCCGGTTTGAGGAATCCAATTCCGTCGGTGAGAGAAGAATGACAATGGACAGCAAAGGCGGAGGAATAGAGGCGCAACAGTACGTGTGGGGCGGTGCAATACCGCTTCAGATTCATCTCCACGAATC...

CDS

2 records

下载 CDS FASTA

LOC131021982
ATGACAATGGACAGCAAAGGCGGAGGAATAGAGGCGCAACAGTACGTGTGGGGCGGTGCAATACCGCTTCAGATTCATCTCCACGAATCTGAAGTCACTACCCTTCCTCCCCCTCCGCCTGCTTTGATATTGGCTCCTCGTGTGGGGTATTTGCCTCTGTTAGTGCCACAGATCAAGCCATTCTTTAACAGTTCTCTTCCTCCTGGTGTTGACACTGTGTGGTTTGAGTATAAAGGCTTGCCGCTGAAATGGTATATTCC...

Protein

2 records

下载 Protein FASTA

XP_057807298.1
MTMDSKGGGIEAQQYVWGGAIPLQIHLHESEVTTLPPPPPALILAPRVGYLPLLVPQIKPFFNSSLPPGVDTVWFEYKGLPLKWYIPTGTLFDLLCSEPERPWNLTIHFRGYPVNLLIPCEGEDSVKWSFINALKEAAYIINGNCKNIMNMSQYDQTELWRSVLNGRLQHSKIRGRSFWLQHCQLEAYLRVYSKLKLDIVGDDFSLKLNTSRQSNAETDAIGTAKSGKIPVRLYVRSIDEDIDELEDAPIVDSWDKISYI...

XP_057807299.1
MTMDSKGGGIEAQQYVWGGAIPLQIHLHESEVTTLPPPPPALILAPRVGYLPLLVPQIKPFFNSSLPPGVDTVWFEYKGLPLKWYIPTGTLFDLLCSEPERPWNLTIHFRGYPVNLLIPCEGEDSVKWSFINALKEAAYIINGNCKNIMNMSQYDQTELWRSVLNGQLEAYLRVYSKLKLDIVGDDFSLKLNTSRQSNAETDAIGTAKSGKIPVRLYVRSIDEDIDELEDAPIVDSWDKISYINCPVEVRGEGKSFSLND...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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