当前解析结果
SmilChr04G003554| 统一新 Gene ID | SmilChr04G003554 |
|---|---|
| 名称 | SmilChr04G003554 |
| 描述 | uncharacterized SmilChr04G003554 |
| 染色体 / SeqID | Chr04 / NC_080390.1 |
| 坐标与链方向 | 51933400 - 51936993 / + |
| NCBI Gene ID | LOC131023590 |
|---|---|
| GeneID | 131023590 |
| locus_tag | - |
| NCBI Name | LOC131023590 |
| 原始查询 | LOC131023590 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=26.5; qcov=0.649; evalue=2.67e-58; confidence=low |
| Rice | Os06g0704400- identity=30.1; qcov=0.83; evalue=1.7e-98; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005507 (copper ion binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF04434 (SWIM); PF10551 (MULE); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131023590 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057809117.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057809117.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057809117.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057809117.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057809117.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr4:51933406 |
GA |
G |
1bp_deletion | frameshift_variant | 3 | B29,B59,C38 |
Chr4:51933406 |
GA |
G |
1bp_deletion | CDS_variant | 3 | B29,B59,C38 |
Chr4:51933647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A6,B119,C79,C84,D5 |
Chr4:51933652 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr4:51933668 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B76,B94,C31,C63 |
Chr4:51933693 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B86 |
Chr4:51933716 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B3,C76,C9 |
Chr4:51933738 |
AT |
A |
1bp_deletion | frameshift_variant | 2 | B123,C27 |
Chr4:51933738 |
AT |
A |
1bp_deletion | CDS_variant | 2 | B123,C27 |
Chr4:51933743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B3,C32 |
Chr4:51933813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B106,C17 |
Chr4:51933834 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,A9,C72 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057809117.1PF26130
PB1-like 1-99 aa
PF10551
MULE 435-507 aa
PF04434
SWIM 654-682 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057809117.1 |
Pfam | PF26130 |
PB1-like | Domain | 1 | 99 | 2.4e-16 | 60.5 | PB1-like domain |
XP_057809117.1 |
Pfam | PF10551 |
MULE | Domain | 435 | 507 | 5.2e-07 | 30.7 | MULE transposase domain |
XP_057809117.1 |
Pfam | PF04434 |
SWIM | Domain | 654 | 682 | 4.7e-08 | 33.1 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。