Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G000049`

Chromosome: Chr01 Coordinates: 769749-772394 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G000049`
Name	SmilChr01G000049
Description	pectinesterase 4-like
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	769749 - 772394 / `+`

ID Mapping

NCBI Gene ID	`LOC131007171`
GeneID	`131007171`
locus_tag	`-`
NCBI Name	`LOC131007171`
Original query	`SmilChr01G000049`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	pectinesterase 4-like
Product	pectinesterase 4-like
Arabidopsis	`AT2G47030` (VGDH1) Plant invertase/pectin methylesterase inhibitor superfamily [Source:NCBI gene (formerly Entrezgene);Acc:819317] identity=49; qcov=0.927; evalue=1.51e-100; confidence=high
Rice	`Os04g0458900` (OsPME14) - identity=49.3; qcov=0.921; evalue=3.85e-97; confidence=high
GO	GO:0030599 (pectinesterase activity); GO:0042545 (cell wall modification); GO:0046910 (pectinesterase inhibitor activity)
KEGG	smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01095 (Pectinesterase)
InterPro	-
eggNOG	-
NR	GeneID:131007171

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057790322.1`
2	Cell wall	细胞壁	0.20000	`XP_057790322.1`
3	Vacuole	液泡	0.20000	`XP_057790322.1`
4	Nucleus	细胞核	0.00000	`XP_057790322.1`
5	Chromosome	染色体	0.00000	`XP_057790322.1`

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EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057790322.1

328 aa

164

328

Pectinesterase

PF01095 Pectinesterase 25-311 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057790322.1`	Pfam	`PF01095`	Pectinesterase	Repeat	25	311	3.9e-104	348.3	Pectinesterase

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057934339.1
ATTCGAATTACTACTATCTGAAGATGAGAATAGATCTGTTTATGCAATTAATCTGAGTCAAGGAAGAGTATCAATTTGCAGCTTCTTCTTCAGGATGGTGCCACAAAGAAAATCCTGTTCCAGTTTCAATGTATAACATAGAAATTGGAGAAAGCATTGGATAACTTGCCTTATGATGATTTTAACATATCAGAAGAAGTGCTAGAGCAGATAAGTATTTGCCATTGAGCATCTTTATAGTGTTATTTGAACTTGATTCA...

CDS

1 records

Download CDS FASTA

LOC131007171
ATGTTGTTAATAAAGATTTGTTATTGTGCAAAGCTGAATATATATATTGATAAATTGAGGTATTTCTTACAAAATTTCAAGACCATCAGCGAAGCTCTCAATGCTTACCCGCCCAAATTCAAGGGCAGATTCGTCATCCACGTCAAGGCCGGCGTCTACAACGAGCAGGTCATCGTGGACAAGAAGAAGCCTAATGTCTTCATCTACGGAGACGGCATTGCCAAGACCATTGTGACGGGCAGCAAGAACTACGGCATTAT...

Protein

1 records

Download Protein FASTA

XP_057790322.1
MLLIKICYCAKLNIYIDKLRYFLQNFKTISEALNAYPPKFKGRFVIHVKAGVYNEQVIVDKKKPNVFIYGDGIAKTIVTGSKNYGIMNIGTMHTATFANEASGFIARGMSFRNEAGPQGHQAVAFRSQGDKTALFDCSFEGSQDTLYYQNLKQFYRNCRIYGTVDFIFGKGDCVIQDSQIIVRKPLPNQFNTVTADGREIKRGSNGLVLHHCSIVPDDYLWPVRFQIPTFLGRPWKPEALTVVMQSTLGDFIRPEGWKIW...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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