Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G000092`

Chromosome: Chr01 Coordinates: 1659612-1661243 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G000092`
Name	SmilChr01G000092
Description	uncharacterized SmilChr01G000092
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	1659612 - 1661243 / `+`

ID Mapping

NCBI Gene ID	`LOC131007230`
GeneID	`131007230`
locus_tag	`-`
NCBI Name	`LOC131007230`
Original query	`SmilChr01G000092`

Open ID mapping

Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	hit=Os08g0467600; species=rice; confidence=low
Product	hit=Os08g0467600; species=rice; confidence=low
Arabidopsis	`-` -
Rice	`Os08g0467600` - identity=34.6; qcov=0.444; evalue=8.07e-07; confidence=low
GO	GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF04504 (GeBP-like_DBD)
InterPro	-
eggNOG	-
NR	GeneID:131007230

Open annotation module

Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790367.1`
2	Chromosome	染色体	0.00000	`XP_057790367.1`
3	Centromere	着丝粒	0.00000	`XP_057790367.1`
4	Chromatin	染色质	0.00000	`XP_057790367.1`
5	Telomere	端粒	0.00000	`XP_057790367.1`

Open subcellular search

EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr1:1660120`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B29
`Chr1:1660273`	`ATG`	`A`	2bp_deletion	frameshift_variant	1	C29
`Chr1:1660273`	`ATG`	`A`	2bp_deletion	CDS_variant	1	C29
`Chr1:1660353`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr1:1660417`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,B29

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057790367.1

234 aa

117

234

GeBP-like_DBD

PF04504 GeBP-like_DBD 51-137 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057790367.1`	Pfam	`PF04504`	GeBP-like_DBD	Domain	51	137	4.7e-15	56.8	Glabrous-enhancer-binding protein-like family, DBD domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057934384.1
AGTATATTTATCAAAGGATATGTTAGTAAAAACACACAAGACTCAAAAATCGGCTCATTCTCTACCAAGCCAAAAAACCGGGTTTTAATTGCCTTTATTAAATAATCATCATCACACAATCAATAGAGCCGGAAAACGAAGTGGAGTAGTATTTTAGAACCCTAAAACAAGCAGGCGCAGCGGTTGAGTTCCCCAAAAAGGCGGGTGTTAGAGTTGTCCGATGTCGGCGAAAGAAAACGAGATGCGCAAGCAAGGTGATT...

CDS

1 records

Download CDS FASTA

LOC131007230
ATGTCGGCGAAAGAAAACGAGATGCGCAAGCAAGGTGATTCTGATTGCAGTTCCGATTCTGGGGGTGATTCTGATTGCAGTTCCGATTCTGGGAGCGGAGCACAAGCTATGACGCTAGCACTGAAACCGAAACACCCGCCGTCGTCGTCGTCTAAGGTATTTAGCGACGAAGACTCAATAACGCTGTTAAAGAGTCTAGCCGTTTTCTGGGCTAGTGGTAGAAATAATAAGTGGGCAGACTTCCACCGGATCGTCAAGGA...

Protein

1 records

Download Protein FASTA

XP_057790367.1
MSAKENEMRKQGDSDCSSDSGGDSDCSSDSGSGAQAMTLALKPKHPPSSSSKVFSDEDSITLLKSLAVFWASGRNNKWADFHRIVKDKLSKPDFTRVQISEKVRSLNKKYKTNWQRGRVPDNPHELVVYELSKPLWEDEMNQESGKGMKKNKKRKRERNPTLDEFRSSYPNLYASFNMFGFPPKIARERFVLIGREKAQKLENEWKQLTEELHCLEGKRLALSTKPTGDNSEEG

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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