Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G000165`

Chromosome: Chr01 Coordinates: 2733779-2735810 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G000165`
Name	SmilChr01G000165
Description	60S ribosomal protein L18-2
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	2733779 - 2735810 / `+`

ID Mapping

NCBI Gene ID	`LOC131007279`
GeneID	`131007279`
locus_tag	`-`
NCBI Name	`LOC131007279`
Original query	`SmilChr01G000165`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	60S ribosomal protein L18-2
Product	60S ribosomal protein L18-2
Arabidopsis	`AT3G05590` (RPL18) ribosomal protein L18 [Source:NCBI gene (formerly Entrezgene);Acc:819725] identity=84; qcov=1; evalue=7.78e-117; confidence=high
Rice	`Os03g0341100` - identity=80.2; qcov=1; evalue=7.3e-110; confidence=high
GO	GO:0003723 (RNA binding); GO:0003735 (structural constituent of ribosome); GO:0005840 (ribosome); GO:0006412 (translation); GO:0022625 (cytosolic large ribosomal subunit)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00828 (Ribosomal_L27A); PF17135 (Ribosomal_L18)
InterPro	-
eggNOG	-
NR	GeneID:131007279

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057790409.1`
2	Cytosol	细胞质基质	0.40000	`XP_057790409.1`
3	Nucleus	细胞核	0.00000	`XP_057790409.1`
4	Chromosome	染色体	0.00000	`XP_057790409.1`
5	Centromere	着丝粒	0.00000	`XP_057790409.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr1:2734184`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B76,D10
`Chr1:2734801`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B76,D10
`Chr1:2735575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr1:2735656`	`G`	`GA`	1bp_insertion	frameshift_variant	10	A10,B100,B110,B114,B19,B23,B84,B87,B94,D2
`Chr1:2735657`	`G`	`GT`	1bp_insertion	frameshift_variant	16	A11,A13,A9,B100,B108,B127,B49,B68,B69,C11,C25,C39,C48,C57,C8,D1

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Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057790409.1

187 aa

187

Ribosomal_L18

Ribosomal_L27A

PF17135 Ribosomal_L18 2-187 aa PF00828 Ribosomal_L27A 95-119 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057790409.1`	Pfam	`PF17135`	Ribosomal_L18	Family	2	187	1.4e-93	312.3	Ribosomal protein 60S L18 and 50S L18e
`XP_057790409.1`	Pfam	`PF00828`	Ribosomal_L27A	Domain	95	119	3.3e-05	25.0	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057934426.1
AATTTTATGTTTGATGAGCCAAATCCACAGCGGGCCCAATAATATTGGGCTACTTAGAGCTCTAGGGTTCGCAGCCCATTCAATACCGCATATAGCCGCTCCGCTTTATAACTCCAACACTACAAAACCCTAATTTTCTCTTCCCTTAACACTCCAGAGCAGGTACAGAAGCGGCACGCGAGAGAAGAAGCAGCAGCAGCAGCAATGGGTATCGACTTGGTCGCCGGAGGTAAGGTCAAGAAGACCAAGCGTACAGCGCC...

CDS

1 records

Download CDS FASTA

LOC131007279
ATGGGTATCGACTTGGTCGCCGGAGGTAAGGTCAAGAAGACCAAGCGTACAGCGCCGAAATCCAACGATATCTACCTCAAACTCCTCGTGAAGTTGTACCGTTTTTTGGTGAGGAGAACTGGAAGCAAATTTAATGCGGTTGTTCTGAAGAGACTATTCATGAGCAGGATTAACAGGCCCCCGCTCTCTCTCTCCCGCCTCAGCGCACTCATGAATGGGAAGGAAGATAAGATTGCAGTACTTGTAGGAAGTGTTACCGA...

Protein

1 records

Download Protein FASTA

XP_057790409.1
MGIDLVAGGKVKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSKFNAVVLKRLFMSRINRPPLSLSRLSALMNGKEDKIAVLVGSVTDDIRVHDIPKMKVAALRFTERARARIEKVGGECLTFDQLALRAPLGQNTVLLRGSRNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGKRNSRGFRV

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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