Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000459`

染色体: Chr01 坐标: 9401707-9405133 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000459`
名称	SmilChr01G000459
描述	uncharacterized SmilChr01G000459
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	9401707 - 9405133 / `+`

ID 对照

NCBI Gene ID	`LOC131006525`
GeneID	`131006525`
locus_tag	`-`
NCBI Name	`LOC131006525`
原始查询	`SmilChr01G000459`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0817100; species=rice; confidence=high
产物	hit=Os01g0817100; species=rice; confidence=high
Arabidopsis	`AT4G10360` (AT4G10360) TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826628] identity=59.8; qcov=0.933; evalue=1.13e-109; confidence=high
Rice	`Os01g0817100` - identity=61.4; qcov=0.933; evalue=9.29e-115; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0016020 (membrane); GO:0055088 (lipid homeostasis)
KEGG	-
Pfam	PF03798 (TRAM_LAG1_CLN8)
InterPro	-
eggNOG	-
NR	GeneID:131006525

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057789659.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057789659.1`
3	Nucleus	细胞核	0.00000	`XP_057789659.1`
4	Chromosome	染色体	0.00000	`XP_057789659.1`
5	Centromere	着丝粒	0.00000	`XP_057789659.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:9401917`	`CT`	`C`	1bp_deletion	frameshift_variant	6	A18,B110,B124,B6,B88,C22
`Chr1:9401919`	`GCA`	`G`	2bp_deletion	frameshift_variant	6	A18,B110,B124,B6,B88,C22
`Chr1:9401991`	`CT`	`C`	1bp_deletion	frameshift_variant	1	D10
`Chr1:9401991`	`CT`	`C`	1bp_deletion	CDS_variant	1	D10
`Chr1:9402016`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:9402059`	`T`	`TC`	1bp_insertion	frameshift_variant	3	B124,B6,B88
`Chr1:9402059`	`T`	`TC`	1bp_insertion	CDS_variant	3	B124,B6,B88
`Chr1:9402403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B60
`Chr1:9403125`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A13,A7,B81,B84,C59
`Chr1:9403137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B138,B41,B50,B55
`Chr1:9404862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789659.1

350 aa

175

350

TRAM_LAG1_CLN8

PF03798 TRAM_LAG1_CLN8 145-337 aa

XP_057789660.1

269 aa

134

269

TRAM_LAG1_CLN8

PF03798 TRAM_LAG1_CLN8 64-256 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789659.1`	Pfam	`PF03798`	TRAM_LAG1_CLN8	Domain	145	337	8.9e-35	121.1	TLC domain
`XP_057789660.1`	Pfam	`PF03798`	TRAM_LAG1_CLN8	Domain	64	256	3.3e-35	122.5	TLC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933676.1
ATGATAGCAAGTTAAGAAGCAAAAATATTGAGCAGGAATGAATATTCATTCATGGCGTTTAGCTGAACCGTAATTCCGCCTCTTCAGTTTTCACGTGCCCCAATCTTTAACACTATCTCCCTTTTCCTCTCTCTAGAAATCAAAACTAGAAATCAATGCACACCAAAATTGTCAAAATTCAAGCTGTCTATTTCACCGCTGCTGCTGCTGCTGCACAACTACCTAAACAACACAAGAAAACCAATAAGAAATTCAGATAC...

XM_057933677.1
CTCTTCAGTTTTCACGTGCCCCAATCTTTAACACTATCTCCCTTTTCCTCTCTCTAGAAATCAAAACTAGAAATCAATGCACACCAAAATTGTCAAAATTCAAGCTGTCTATTTCACCGCTGCTGCTGCTGCTGCACAACTACCTAAACAACACAAGAAAACCAATAAGAAATTCAGATACCCAATCCATCTCTTTGTCGTTTTCCTTTTCCCTCCCAATTCTGAATTCTCCCACTCTTCACCACCCACCACCAAGGAAA...

CDS

2 records

下载 CDS FASTA

LOC131006525
ATGCACACCAAAATTGTCAAAATTCAAGCTGTCTATTTCACCGCTGCTGCTGCTGCTGCACAACTACCTAAACAACACAAGAAAACCAATAAGAAATTCAGATACCCAATCCATCTCTTTGTCGTTTTCCTTTTCCCTCCCAATTCTGAATTCTCCCACTCTTCACCACCCACCACCAAGCAAGTTCCACAACTTCCTTTCTTCGAATTCAGTCGATTTCAATATTGGAAAGAGGAAAAAGGGATGAGGGGTTTGGAGAT...

LOC131006525
ATGAGGGGTTTGGAGATGGGTGCTGGGTTGATGAATGTGGCCGCTTACGCTACTTCCACCAAGCAGTTAGGGTGGCTCTCCTCGGTTTTGGCTGGTATTTTGATGTGCAAAGTTGTATACGACTTAACAGGCATAATTAGTGCGTCATTAGTGAAGGAGTACAGAAGACTTAACAGGAAACAGAAACTAGAATGGAACAACAGGGGGTTCTCCACTTTCCATGCCATCGCTGCAGCAGCTTGCGCTCTGTATCTCCTGCT...

Protein

2 records

下载 Protein FASTA

XP_057789659.1
MHTKIVKIQAVYFTAAAAAAQLPKQHKKTNKKFRYPIHLFVVFLFPPNSEFSHSSPPTTKQVPQLPFFEFSRFQYWKEEKGMRGLEMGAGLMNVAAYATSTKQLGWLSSVLAGILMCKVVYDLTGIISASLVKEYRRLNRKQKLEWNNRGFSTFHAIAAAACALYLLLISDLFYDSRDQLVINRSSSLSNTTFGVSIGYFLSDLAMILYQYPALGGVEYVMHHGLSMFAIIQSLFSGQAQIYILMVLFTEITTPFVNLRW...

XP_057789660.1
MRGLEMGAGLMNVAAYATSTKQLGWLSSVLAGILMCKVVYDLTGIISASLVKEYRRLNRKQKLEWNNRGFSTFHAIAAAACALYLLLISDLFYDSRDQLVINRSSSLSNTTFGVSIGYFLSDLAMILYQYPALGGVEYVMHHGLSMFAIIQSLFSGQAQIYILMVLFTEITTPFVNLRWYLDVAGMKNSKLYIYNGVALFLGWLVARIVLFVFFFYHMYIHFDQVKLVYPLGFYSLLTVSPVLAMMNAFWFWKIARGMVR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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