当前解析结果
SmilChr01G001465| 统一新 Gene ID | SmilChr01G001465 |
|---|---|
| 名称 | SmilChr01G001465 |
| 描述 | probable inactive receptor kinase At2g26730 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 28450022 - 28452203 / - |
| NCBI Gene ID | LOC131005638 |
|---|---|
| GeneID | 131005638 |
| locus_tag | - |
| NCBI Name | LOC131005638 |
| 原始查询 | SmilChr01G001465 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable inactive receptor kinase At2g26730 |
| 产物 | probable inactive receptor kinase At2g26730 |
| Arabidopsis | AT2G26730 (AT2G26730)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:817214] identity=38; qcov=0.939; evalue=8.09e-110; confidence=medium |
| Rice | Os03g0332900- identity=38.9; qcov=0.903; evalue=3.17e-118; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005638 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057788628.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057788628.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057788628.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057788628.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057788628.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:28450239 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr1:28450246 |
CT |
C |
1bp_deletion | frameshift_variant | 5 | B102,B16,B3,B37,C24 |
Chr1:28450246 |
CT |
C |
1bp_deletion | CDS_variant | 5 | B102,B16,B3,B37,C24 |
Chr1:28450307 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,B50 |
Chr1:28450389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B103,B104,C45,D1 |
Chr1:28450406 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B18,C4 |
Chr1:28450409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B74,C18 |
Chr1:28450433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B53,C25,C35,D10,D11 |
Chr1:28450458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C48 |
Chr1:28450562 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C56,C60 |
Chr1:28450736 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:28450853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,C45,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057788628.1PF00560
LRR_1 127-149 aa
PF00069
Pkinase 329-593 aa
PF07714
PK_Tyr_Ser-Thr 329-595 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057788628.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 127 | 149 | 1.7e-09 | 36.6 | Leucine Rich Repeat |
XP_057788628.1 |
Pfam | PF00069 |
Pkinase | Domain | 329 | 593 | 6.5e-30 | 105.1 | Protein kinase domain |
XP_057788628.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 329 | 595 | 1.4e-30 | 107.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。