当前解析结果
SmilChr01G001713| 统一新 Gene ID | SmilChr01G001713 |
|---|---|
| 名称 | SmilChr01G001713 |
| 描述 | putative phospholipid:diacylglycerol acyltransferase 2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 31598249 - 31600621 / - |
| NCBI Gene ID | LOC131020277 |
|---|---|
| GeneID | 131020277 |
| locus_tag | - |
| NCBI Name | LOC131020277 |
| 原始查询 | SmilChr01G001713 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative phospholipid:diacylglycerol acyltransferase 2 |
| 产物 | putative phospholipid:diacylglycerol acyltransferase 2 |
| Arabidopsis | AT3G44830 (AT3G44830)Lecithin:cholesterol acyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823617] identity=64.5; qcov=1.04; evalue=0; confidence=high |
| Rice | Os09g0444200 (P0046G12.50-1)- identity=59.2; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0006629 (lipid metabolic process); GO:0008374 (GO:0008374) |
| KEGG | smil00561 (Glycerolipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02450 (LCAT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131020277 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 0.80000 | XP_057804974.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057804974.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057804974.1 |
| 4 | Vacuole | 液泡 | 0.20000 | XP_057804974.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057804974.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:31598378 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B15,B6,B63,C47 |
Chr1:31598389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr1:31598486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,B65,B8 |
Chr1:31598515 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr1:31598574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B136,C37,C61,C82 |
Chr1:31598590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A23,B101,B139,B22,C51 |
Chr1:31598629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B63,C74 |
Chr1:31598911 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,C18 |
Chr1:31598923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B15,B40,B52,B6 |
Chr1:31599039 |
TGA |
T |
2bp_deletion | frameshift_variant | 1 | B32 |
Chr1:31599039 |
TGA |
T |
2bp_deletion | CDS_variant | 1 | B32 |
Chr1:31599104 |
C |
CGA |
2bp_insertion | frameshift_variant | 35 | A19,A4,B101,B108,B110,B117,B123,B125,B132,B134,B136,B15,B24,B42,B43,B46,B52,B6,B71,B78,B79,B81,B90,B92,B98,C16,C30,C47,C52,C54,C56,C72,D5,D6,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057804974.1PF02450
LCAT 125-607 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057804974.1 |
Pfam | PF02450 |
LCAT | Family | 125 | 607 | 1.3e-65 | 222.9 | Lecithin:cholesterol acyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。