Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G002598`

染色体: Chr01 坐标: 44146211-44154364 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G002598`
名称	SmilChr01G002598
描述	uncharacterized SmilChr01G002598
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	44146211 - 44154364 / `-`

ID 对照

NCBI Gene ID	`LOC130985011`
GeneID	`130985011`
locus_tag	`-`
NCBI Name	`LOC130985011`
原始查询	`SmilChr01G002598`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0667700; species=rice; confidence=medium
产物	hit=Os03g0667700; species=rice; confidence=medium
Arabidopsis	`AT4G11790` (AT4G11790) Pleckstrin homology (PH) domain superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826785] identity=52.9; qcov=0.642; evalue=6.21e-64; confidence=high
Rice	`Os03g0667700` - identity=43.6; qcov=1.02; evalue=3.37e-75; confidence=medium
GO	GO:0046907 (intracellular transport)
KEGG	smil03013 (Nucleocytoplasmic transport - Salvia miltiorrhiza (redroot sage))
Pfam	PF00638 (Ran_BP1)
InterPro	-
eggNOG	-
NR	GeneID:130985011

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057763731.1`
2	Cytosol	细胞质基质	0.40000	`XP_057763750.1`
3	Nucleus membrane	核膜	0.20000	`XP_057763731.1`
4	Cytoplasm	细胞质	0.20000	`XP_057763750.1`
5	Chromosome	染色体	0.00000	`XP_057763731.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:44150927`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C70,C77
`Chr1:44151976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C70,C77
`Chr1:44152069`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B3,C18
`Chr1:44152094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B32,C8
`Chr1:44152115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr1:44152217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A13,B59
`Chr1:44153914`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B43
`Chr1:44153914`	`TC`	`T`	1bp_deletion	CDS_variant	1	B43
`Chr1:44153917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057763731.1

381 aa

190

381

Ran_BP1

PF00638 Ran_BP1 252-376 aa

XP_057763742.1

359 aa

180

359

Ran_BP1

PF00638 Ran_BP1 230-354 aa

XP_057763750.1

344 aa

172

344

Ran_BP1

PF00638 Ran_BP1 215-339 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057763731.1`	Pfam	`PF00638`	Ran_BP1	Domain	252	376	3.1e-08	34.6	RanBP1 domain
`XP_057763742.1`	Pfam	`PF00638`	Ran_BP1	Domain	230	354	2.8e-08	34.8	RanBP1 domain
`XP_057763750.1`	Pfam	`PF00638`	Ran_BP1	Domain	215	339	2.5e-08	34.9	RanBP1 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057907748.1
AATTTATTCCACAAATATCTAAATAAATCGAAAACAAAGATACATAAATTTATTAAAGAAAGAAAATGGAAAAAATAAAAAATAGGACTAGTAGAAAACATGTTCTTCTCTCTTCTCTGCTTCCGCGGGTCACCCACACTCGTTTAAAACCCTAAATTTTCAGACATCGAGACCGCTAAAGGTGAAGCGCTCTCCACAAAATTTTGAACAAATACTAAATAAATACTACGATATTCAGCATTCATGAGAGGGACGAAGCG...

XM_057907759.1
ATTAAAGAAAGAAAATGGAAAAAATAAAAAATAGGACTAGTAGAAAACATGTTCTTCTCTCTTCTCTGCTTCCGCGGGTCACCCACACTCGTTTAAAACCCTAAATTTTCAGACATCGAGACCGCTAAAGGTGAAGCGCTCTCCACAAAATTTTGAACAAATACTAAATAAATACTACGATATTCAGCATTCATGAGAGGGACGAAGCGCGCAGCGATTTCCGAATCCGCTCAACTTGTAAGTTTTCGCAGAGCAAGAGA...

CDS

3 records

下载 CDS FASTA

LOC130985011
ATGAGAGGGACGAAGCGCGCAGCGATTTCCGAATCCGCTCAACTTTCGCAGAGCAAGAGAGTAACAATGGGGTCGCCGTTCGATGCGCTCAAGGCGGATCAATCAAGCCCGCAGCTGCCGTTGGATGCGAAGAGGGCTGAATCATCAAAACAGCATGTGAGAGCTCTCAACACCCAGTTTGCAAGTTGGGTACAAGCTCAGCTACACAACCACCCAGATGAGCTTTGGGAAGATGGAGTGCAGGACTACTTAAATCATGC...

LOC130985011
ATGGGGTCGCCGTTCGATGCGCTCAAGGCGGATCAATCAAGCCCGCAGCTGCCGTTGGATGCGAAGAGGGCTGAATCATCAAAACAGCATGTGAGAGCTCTCAACACCCAGTTTGCAAGTTGGGTACAAGCTCAGCTACACAACCACCCAGATGAGCTTTGGGAAGATGGAGTGCAGGACTACTTAAATCATGCTAAAAGCATCATGGACAAATTTAGTGACGTGGTAAACTGGCTGAAAGCAAATTCTTCAAAAGGAGA...

Protein

3 records

下载 Protein FASTA

XP_057763731.1
MRGTKRAAISESAQLSQSKRVTMGSPFDALKADQSSPQLPLDAKRAESSKQHVRALNTQFASWVQAQLHNHPDELWEDGVQDYLNHAKSIMDKFSDVVNWLKANSSKGESPGELRSNEAQTKPTSEVDKNSHKLVLEKPGFPSFSAAAFAPISGSWNFGNDTQSKPASEIDKSSQSIDWGKPVFPESSVASSPSLGNWPSGNVFVNSAPFSFGGNQFLVTGNSNAIPFGNATSSEADGEEDVEQPGSPSVKKSQEEGIVL...

XP_057763742.1
MGSPFDALKADQSSPQLPLDAKRAESSKQHVRALNTQFASWVQAQLHNHPDELWEDGVQDYLNHAKSIMDKFSDVVNWLKANSSKGESPGELRSNEAQTKPTSEVDKNSHKLVLEKPGFPSFSAAAFAPISGSWNFGNDTQSKPASEIDKSSQSIDWGKPVFPESSVASSPSLGNWPSGNVFVNSAPFSFGGNQFLVTGNSNAIPFGNATSSEADGEEDVEQPGSPSVKKSQEEGIVLVHEVKCKLYVKSNDPEDKDAWK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器