当前解析结果
SmilChr01G002848| 统一新 Gene ID | SmilChr01G002848 |
|---|---|
| 名称 | SmilChr01G002848 |
| 描述 | uncharacterized SmilChr01G002848 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 47053227 - 47058908 / + |
| NCBI Gene ID | LOC130987590 |
|---|---|
| GeneID | 130987590 |
| locus_tag | - |
| NCBI Name | LOC130987590 |
| 原始查询 | SmilChr01G002848 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | tubulin-tyrosine ligase [Source:NCBI gene (formerly Entrezgene);Acc:844091]; symbol=AT1G77550; hit=AT1G77550; species=arabidopsis; confidence=high |
| 产物 | tubulin-tyrosine ligase [Source:NCBI gene (formerly Entrezgene);Acc:844091]; symbol=AT1G77550; hit=AT1G77550; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G77550 (AT1G77550)tubulin-tyrosine ligase [Source:NCBI gene (formerly Entrezgene);Acc:844091] identity=65; qcov=0.995; evalue=0; confidence=high |
| Rice | Os03g0179000- identity=64.2; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0036211 (protein modification process) |
| KEGG | - |
| Pfam | PF03133 (TTL); PF25556 (SET_TTL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987590 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057767163.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057767163.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057767163.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057767163.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057767163.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:47053417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B134,B69,C64,C66 |
Chr1:47053582 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B123,B3,B85,C23 |
Chr1:47053876 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B128,B132,B15 |
Chr1:47054389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B30,C19,C41 |
Chr1:47054632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B132,B15 |
Chr1:47055129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr1:47055227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B30,C19,C41,D11 |
Chr1:47055331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr1:47056450 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B128,B132,B15 |
Chr1:47056646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C34 |
Chr1:47057268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,B13,B140 |
Chr1:47057350 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B83,C46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057767163.1PF25556
SET_TTL 72-116 aa
PF25556
SET_TTL 385-492 aa
PF03133
TTL 584-833 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767163.1 |
Pfam | PF25556 |
SET_TTL | Domain | 72 | 116 | 1.4e-39 | 136.4 | Tubulin tyrosine ligase SET-like domain |
XP_057767163.1 |
Pfam | PF25556 |
SET_TTL | Domain | 385 | 492 | 1.4e-39 | 136.4 | Tubulin tyrosine ligase SET-like domain |
XP_057767163.1 |
Pfam | PF03133 |
TTL | Family | 584 | 833 | 2.2e-51 | 175.6 | Tubulin-tyrosine ligase family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。