当前解析结果
SmilChr01G002885| 统一新 Gene ID | SmilChr01G002885 |
|---|---|
| 名称 | SmilChr01G002885 |
| 描述 | ethylene-responsive transcription factor ERF017 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 47460800 - 47461832 / - |
| NCBI Gene ID | LOC130987911 |
|---|---|
| GeneID | 130987911 |
| locus_tag | - |
| NCBI Name | LOC130987911 |
| 原始查询 | SmilChr01G002885 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene-responsive transcription factor ERF017 |
| 产物 | ethylene-responsive transcription factor ERF017 |
| Arabidopsis | AT1G19210 (AT1G19210)Integrase-type DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838504] identity=51.8; qcov=0.948; evalue=5.23e-58; confidence=high |
| Rice | Os02g0781300 (OsERF#011)- identity=62.9; qcov=0.424; evalue=1.57e-29; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00847 (AP2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130987911 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057767601.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057767601.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057767601.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057767601.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:47461137 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B14,B57,C54 |
Chr1:47461160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B76,C16,D2 |
Chr1:47461197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:47461213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr1:47461227 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:47461313 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A5,B6 |
Chr1:47461317 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr1:47461364 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B26 |
Chr1:47461364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr1:47461383 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr1:47461389 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B64,C83 |
Chr1:47461428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057767601.1PF00847
AP2 29-79 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057767601.1 |
Pfam | PF00847 |
AP2 | Domain | 29 | 79 | 1.2e-11 | 45.5 | AP2 domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。