Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003324`

染色体: Chr01 坐标: 51933208-51936060 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003324`
名称	SmilChr01G003324
描述	inositol oxygenase 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	51933208 - 51936060 / `+`

ID 对照

NCBI Gene ID	`LOC130991987`
GeneID	`130991987`
locus_tag	`-`
NCBI Name	`LOC130991987`
原始查询	`SmilChr01G003324`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	inositol oxygenase 1-like
产物	inositol oxygenase 1-like
Arabidopsis	`AT1G14520` (MIOX1) myo-inositol oxygenase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838014] identity=76.7; qcov=1.02; evalue=5.81e-179; confidence=high
Rice	`Os06g0561000` (OsMIOX) - identity=74.8; qcov=1.02; evalue=6.01e-174; confidence=high
GO	GO:0005506 (iron ion binding); GO:0005737 (cytoplasm); GO:0019310 (inositol catabolic process); GO:0050113 (inositol oxygenase activity)
KEGG	smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00562 (Inositol phosphate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF05153 (MIOX)
InterPro	-
eggNOG	-
NR	GeneID:130991987

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057772414.1`
2	Cytoplasm	细胞质	1.00000	`XP_057772422.1`
3	Nucleoplasm	核质	0.40000	`XP_057772422.1`
4	Nucleus	细胞核	0.00000	`XP_057772414.1`
5	Chromosome	染色体	0.00000	`XP_057772414.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:51934483`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B104,D10
`Chr1:51934662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66
`Chr1:51934747`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B83
`Chr1:51935357`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B105,B75
`Chr1:51935754`	`C`	`CT`	1bp_insertion	stop_gained,frameshift_variant	128	A10,A13,A14,A15,A16,A18,A2,A20,A22,A23,A24,A4,A5,A7,A8,B1,B101,B103,B104,B105,B106,B108,B110,B113,B114,B117,B118,B120,B123,B125,B126,B129,B132,B133,B134,B139,B14,B16,B19,B20,B21,B22,B24,B25,B27,B28,B29,B33,B34,B36,B37,B38,B39,B4,B40,B41,B42,B43,B46,B50,B53,B57,B59,B61,B63,B64,B66,B67,B68,B7,B70,B72,B74,B75,B78,B80,B83,B84,B86,B87,B88,B89,B9,B90,B91,B95,B99,C11,C15,C16,C20,C25,C26,C28,C3,C31,C36,C38,C42,C44,C45,C47,C51,C52,C53,C57,C58,C59,C6,C61,C63,C64,C66,C67,C69,C70,C71,C72,C73,C75,C78,C8,C83,C85,C87,C9,D10,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772414.1

316 aa

158

316

MIOX

PF05153 MIOX 54-295 aa

XP_057772422.1

303 aa

152

303

MIOX

PF05153 MIOX 54-303 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772414.1`	Pfam	`PF05153`	MIOX	Family	54	295	3.6e-122	407.5	Myo-inositol oxygenase
`XP_057772422.1`	Pfam	`PF05153`	MIOX	Family	54	303	1.5e-126	421.8	Myo-inositol oxygenase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916439.1
TATTGCATGGACAGCTGGGTGGGGGGGTTTGGAGTCTTGGAGATCTCGTCTATCTCCTACGTAAACATAATAGACTTCAAAATAAAATAATTATCATATCATAATAATGTGGAAAAAAAGTATATAAGAGTTACAGATTTTCAGGGAAGGACTTCTTGCCTCCGAATTCTCAGGGAAGGACTTTCCGGCAATTATAAATACTGCTATTTTTCTTTCTGAAAAAATGCCACCAACAATTTCCTTTAATTTTTCTGCTCTTC...

XM_057916431.1
TTTGGAGTCTTGGAGATCTCGTCTATCTCCTACGTAAACATAATAGACTTCAAAATAAAATAATTATCATATCATAATAATGTGGAAAAAAAGTATATAAGAGTTACAGATTTTCAGGGAAGGACTTCTTGCCTCCGAATTCTCAGGGAAGGACTTTCCGGCAATTATAAATACTGCTATTTTTCTTTCTGAAAAAATGCCACCAACAATTTCCTTTAATTTTTCTGCTCTTCTTCTTCTTCGTTTCTTCACTTTCATTC...

CDS

2 records

下载 CDS FASTA

LOC130991987
ATGACTATCCTCATTAATCACCAGCCTCAGTTTGGGGTCGAAGGGGAGGAAAAGGTGTGTAGTGAACAAGATTTGATTTACAATGGAGGATTTGTGGTGCCACATGCCAATTCGTTTGGCCATAACTTTAGGGATTACGATGCTGAAAGTGAGAGGCAAGAAGGAGTGGAGAATTTCTATAGGACCAATCACATTTACCAGACTTATGACTTTGTGAAGAGAATGAGAGAAGAATATGGGAAATTGGAGAAGGTGGAAAT...

Protein

2 records

下载 Protein FASTA

XP_057772414.1
MTILINHQPQFGVEGEEKVCSEQDLIYNGGFVVPHANSFGHNFRDYDAESERQEGVENFYRTNHIYQTYDFVKRMREEYGKLEKVEMSIWECCELLNNVVDESDPDLDEPQIEHLLQTAEAIRKDYPHQDWLHLTALIHDLGKVLLLPSFGELPQWAVVGDTFPVGCAFDESIVHHKHFKENPDYNNPAYNTKFGAYKKGCGLDKVLMSWGHDDYMYLVAKENKSTLPSAGLFIIRYHSFYALHRSGAYKHLMNEEDEEN...

XP_057772422.1
MTILINHQPQFGVEGEEKVCSEQDLIYNGGFVVPHANSFGHNFRDYDAESERQEGVENFYRTNHIYQTYDFVKRMREEYGKLEKVEMSIWECCELLNNVVDESDPDLDEPQIEHLLQTAEAIRKDYPHQDWLHLTALIHDLGKVLLLPSFGELPQWAVVGDTFPVGCAFDESIVHHKHFKENPDYNNPAYNTKFGAYKKGCGLDKVLMSWGHDDYMYLVAKENKSTLPSAGLFIIRYHSFYALHRSGAYKHLMNEEDEEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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