Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G003404`

染色体: Chr01 坐标: 52717544-52721301 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G003404`
名称	SmilChr01G003404
描述	transcription factor VIP1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	52717544 - 52721301 / `+`

ID 对照

NCBI Gene ID	`LOC130992974`
GeneID	`130992974`
locus_tag	`-`
NCBI Name	`LOC130992974`
原始查询	`SmilChr01G003404`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor VIP1-like
产物	transcription factor VIP1-like
Arabidopsis	`AT1G43700` (VIP1) VIRE2-interacting protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:840957] identity=45.5; qcov=1.15; evalue=2.79e-73; confidence=high
Rice	`Os12g0162500` (OsbZIP84) - identity=52.1; qcov=0.893; evalue=2.26e-67; confidence=high
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF00170 (bZIP_1); PF07716 (bZIP_2)
InterPro	-
eggNOG	-
NR	GeneID:130992974

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057773670.1`
2	Chromosome	染色体	0.00000	`XP_057773670.1`
3	Centromere	着丝粒	0.00000	`XP_057773670.1`
4	Chromatin	染色质	0.00000	`XP_057773670.1`
5	Telomere	端粒	0.00000	`XP_057773670.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:52718530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B108,B117,B121,B44,C75
`Chr1:52718612`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,C41
`Chr1:52718618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr1:52718651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr1:52718840`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:52718860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C41
`Chr1:52718922`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C41
`Chr1:52719944`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,B81,B88
`Chr1:52720843`	`C`	`T`	EMS_canonical_SNV	stop_gained	65	A10,A13,A15,A5,A9,B100,B103,B105,B106,B109,B112,B118,B12,B123,B126,B13,B130,B132,B135,B139,B14,B16,B24,B25,B27,B36,B37,B65,B66,B68,B7,B73,B75,B78,B83,B89,B93,B94,C10,C2,C25,C32,C33,C41,C42,C43,C44,C45,C50,C54,C56,C58,C59,C61,C68,C78,C79,C8,C80,C86,C87,D10,D11,D4,D8
`Chr1:52720859`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:52721057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B73,C41

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057773670.1

330 aa

165

330

bZIP_2

bZIP_1

PF07716 bZIP_2 153-204 aa PF00170 bZIP_1 155-203 aa

XP_057773678.1

290 aa

145

290

bZIP_2

bZIP_1

PF07716 bZIP_2 153-204 aa PF00170 bZIP_1 155-212 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057773670.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	153	204	1.6e-06	28.7	Basic region leucine zipper
`XP_057773670.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	155	203	1.1e-08	35.8	bZIP transcription factor
`XP_057773678.1`	Pfam	`PF07716`	bZIP_2	Coiled-coil	153	204	1.1e-06	29.3	Basic region leucine zipper
`XP_057773678.1`	Pfam	`PF00170`	bZIP_1	Coiled-coil	155	212	5.7e-09	36.7	bZIP transcription factor

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057917687.1
AAATTCCGAACTTAATAAATAATCCTTTCATTCCATTATTAGTGACACATTATTTTTTGACACAAGAATTAAAAATAAGTTGTAAATTGGTTATAGGTAATAAGATCCATATTTCTTTAACGATAAATTTAAAATGGAAAGTGAACTATTAATAATAGGAAGAGCCAATGAGGCTTAGCTCAAGTGGCAAAGCTGATGCGCCAAAAAACTCTCTTTTATGAGAGGTTTTGGATTCGATCTCACCTGCGTACGGGTCGTTT...

XM_057917695.1
AAATTCCGAACTTAATAAATAATCCTTTCATTCCATTATTAGTGACACATTATTTTTTGACACAAGAATTAAAAATAAGTTGTAAATTGGTTATAGGTAATAAGATCCATATTTCTTTAACGATAAATTTAAAATGGAAAGTGAACTATTAATAATAGGAAGAGCCAATGAGGCTTAGCTCAAGTGGCAAAGCTGATGCGCCAAAAAACTCTCTTTTATGAGAGGTTTTGGATTCGATCTCACCTGCGTACGGGTCGTTT...

CDS

2 records

下载 CDS FASTA

LOC130992974
ATGATGGACCTAAAATTCGCCGGAAAGCCCGCGGCCCCATACTTCCCGGGCCGGGCCGACCTGGACCAGATGCCCGATACCCCGACCCGCCGCGCCCAGCACCGCCGGGCCCAGTCGGAGACCCACTTTCGGTTCCCCGAGCTCGACGATTTCCTCCTCGACGACGTCATGGTGGAGCTCAATCTCGAACTGCCCCCGACGCCGCCGTCGCTCCTCCCGGCGGCGTCTGACGGCGCGAGGCCCGGGGCACATTTGAGGAG...

Protein

2 records

下载 Protein FASTA

XP_057773670.1
MMDLKFAGKPAAPYFPGRADLDQMPDTPTRRAQHRRAQSETHFRFPELDDFLLDDVMVELNLELPPTPPSLLPAASDGARPGAHLRSLSMDADFFDGLNLDGQTAAVGTAPPRPKHRHSNSMDGYSSATSSEMESSVKKAMAADRLSELALLDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATTLSAQITVLQRDASGLTAENKELKLKLQALQQQAELREGKFYSMQVLCFDAIMLQQMIFSMSLYVMT...

XP_057773678.1
MMDLKFAGKPAAPYFPGRADLDQMPDTPTRRAQHRRAQSETHFRFPELDDFLLDDVMVELNLELPPTPPSLLPAASDGARPGAHLRSLSMDADFFDGLNLDGQTAAVGTAPPRPKHRHSNSMDGYSSATSSEMESSVKKAMAADRLSELALLDPKRAKRILANRQSAARSKERKTRYTSELERKVQTLQTEATTLSAQITVLQRDASGLTAENKELKLKLQALQQQAELREALNEALRNELQHLKIAAGQASSPPPSLHY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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