Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004199`

染色体: Chr01 坐标: 60470346-60474440 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004199`
名称	SmilChr01G004199
描述	transcription factor PIF1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	60470346 - 60474440 / `+`

ID 对照

NCBI Gene ID	`LOC131000351`
GeneID	`131000351`
locus_tag	`-`
NCBI Name	`LOC131000351`
原始查询	`SmilChr01G004199`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription factor PIF1
产物	transcription factor PIF1
Arabidopsis	`AT2G20180` (PIL5) phytochrome interacting factor 3-like 5 [Source:NCBI gene (formerly Entrezgene);Acc:816538] identity=40.7; qcov=1.01; evalue=2.95e-79; confidence=medium
Rice	`Os12g0610200` (OsPIL11) - identity=37.4; qcov=0.728; evalue=1.04e-51; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription); GO:0046983 (protein dimerization activity)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00010 (HLH)
InterPro	-
eggNOG	-
NR	GeneID:131000351

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782208.1`
2	Chromosome	染色体	0.00000	`XP_057782208.1`
3	Centromere	着丝粒	0.00000	`XP_057782208.1`
4	Chromatin	染色质	0.00000	`XP_057782208.1`
5	Telomere	端粒	0.00000	`XP_057782208.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:60471059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:60471223`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B7,C44
`Chr1:60471252`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B7,B73,C44
`Chr1:60471256`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:60471365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B12,B49,B51
`Chr1:60472746`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:60472776`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr1:60473471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B43
`Chr1:60473479`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr1:60474106`	`G`	`GGT`	2bp_insertion	stop_gained,frameshift_variant	136	A1,A10,A15,A19,A20,A21,A25,A5,A8,A9,B1,B10,B101,B102,B104,B105,B107,B108,B109,B110,B111,B115,B117,B118,B121,B126,B127,B13,B130,B134,B136,B137,B139,B14,B15,B16,B18,B19,B2,B20,B21,B24,B25,B26,B3,B33,B37,B38,B39,B4,B40,B44,B50,B52,B54,B58,B59,B6,B61,B63,B65,B66,B68,B7,B70,B71,B72,B73,B77,B78,B79,B8,B86,B87,B89,B9,B90,B91,B92,B98,B99,C1,C10,C11,C13,C14,C15,C16,C17,C18,C19,C23,C29,C31,C32,C33,C35,C36,C39,C4,C41,C42,C43,C44,C45,C46,C48,C49,C51,C52,C53,C55,C56,C57,C59,C60,C62,C63,C64,C66,C68,C69,C70,C74,C76,C77,C82,C83,C84,C9,D1,D10,D11,D6,D7,D8
`Chr1:60474121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782208.1

533 aa

266

533

HLH

PF00010 HLH 298-345 aa

XP_057782215.1

507 aa

254

507

HLH

PF00010 HLH 298-345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782208.1`	Pfam	`PF00010`	HLH	Domain	298	345	4.2e-13	49.6	Helix-loop-helix DNA-binding domain
`XP_057782215.1`	Pfam	`PF00010`	HLH	Domain	298	345	3.9e-13	49.7	Helix-loop-helix DNA-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926225.1
TTATTCAATTTGTTCGTTGGGGGCGGGGGGCCTTATCTTCTCCCCCTGCGCAACAACCCATTTACCACAACCAACAATCATCTACATACAAAAAAGGCTAAGCACACAGGAGAGAGAAATTCAACTTCCTCTATATTTCTTAAATCCTCCCCTTTTTGGAACTCCCTCGCTATCCTCAATCATACCTAGATTCAATCTCTTCGGATGATTAATTTCCCCACCTGAAAACAAATTACTCAAACCAGACCATGAATCACTGC...

XM_057926232.1
TTATTCAATTTGTTCGTTGGGGGCGGGGGGCCTTATCTTCTCCCCCTGCGCAACAACCCATTTACCACAACCAACAATCATCTACATACAAAAAAGGCTAAGCACACAGGAGAGAGAAATTCAACTTCCTCTATATTTCTTAAATCCTCCCCTTTTTGGAACTCCCTCGCTATCCTCAATCATACCTAGATTCAATCTCTTCGGATGATTAATTTCCCCACCTGAAAACAAATTACTCAAACCAGACCATGAATCACTGC...

CDS

2 records

下载 CDS FASTA

LOC131000351
ATGAATCACTGCGTTCCCGAATTTCATGAAATGGAGGACGACGATTCCATTCCCACGCCTTCCACTTTCTCTAGACCCAAAAGGACTGCGACAGGTGAGGAGGAGATCATGGAGCTGCTATGGCAGAACGGTCAAGTAGTGGTGCAGAGCCAGAACCAGAAACCGCCCAAGAGGACCGACTCCTGCGGCGGCAGCGGAGAGGTCGTGATTCCGCCGGAGAGGGAGATCCGATCCACCGCCGAGGAGCACCAGCATTTGTT...

Protein

2 records

下载 Protein FASTA

XP_057782208.1
MNHCVPEFHEMEDDDSIPTPSTFSRPKRTATGEEEIMELLWQNGQVVVQSQNQKPPKRTDSCGGSGEVVIPPEREIRSTAEEHQHLFMQEDEMASWLQYPLDDSFDRDFYADLLYSAPPPPPLITATANAQPRAAAEIRPPPIQTPVARPDNPPRVHNFVHFSRLPIRPRTAPRESSTVVESNETPTDARESRVSHKVTDSRPPVHADTSTVRTRDTSGAAGTCDLTVTSSPDGSPASFSGETHQPQQKPAAAADDRKRK...

XP_057782215.1
MNHCVPEFHEMEDDDSIPTPSTFSRPKRTATGEEEIMELLWQNGQVVVQSQNQKPPKRTDSCGGSGEVVIPPEREIRSTAEEHQHLFMQEDEMASWLQYPLDDSFDRDFYADLLYSAPPPPPLITATANAQPRAAAEIRPPPIQTPVARPDNPPRVHNFVHFSRLPIRPRTAPRESSTVVESNETPTDARESRVSHKVTDSRPPVHADTSTVRTRDTSGAAGTCDLTVTSSPDGSPASFSGETHQPQQKPAAAADDRKRK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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