当前解析结果
SmilChr01G004218| 统一新 Gene ID | SmilChr01G004218 |
|---|---|
| 名称 | SmilChr01G004218 |
| 描述 | gamma-tubulin complex component 3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 60571952 - 60575509 / + |
| NCBI Gene ID | LOC131000516 |
|---|---|
| GeneID | 131000516 |
| locus_tag | - |
| NCBI Name | LOC131000516 |
| 原始查询 | SmilChr01G004218 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | gamma-tubulin complex component 3 |
| 产物 | gamma-tubulin complex component 3 |
| Arabidopsis | AT5G06680 (SPC98)spindle pole body component 98 [Source:NCBI gene (formerly Entrezgene);Acc:830557] identity=77; qcov=0.761; evalue=0; confidence=high |
| Rice | Os09g0446200- identity=68; qcov=0.744; evalue=0; confidence=high |
| GO | GO:0000278 (mitotic cell cycle); GO:0000922 (spindle pole); GO:0000923 (equatorial microtubule organizing center); GO:0005813 (centrosome); GO:0007020 (microtubule nucleation); GO:0008275 (gamma-tubulin small complex); GO:0031122 (cytoplasmic microtubule organization); GO:0043015 (gamma-tubulin binding); GO:0051011 (microtubule minus-end binding); GO:0051225 (spindle assembly); GO:0051321 (meiotic cell cycle) |
| KEGG | - |
| Pfam | PF04130 (GCP_C_terminal); PF17681 (GCP_N_terminal) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000516 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Phragmoplast | Phragmoplast | 0.80000 | XP_057782452.1 |
| 2 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057782452.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057782452.1 |
| 4 | Chromosome | 染色体 | 0.20000 | XP_057782452.1 |
| 5 | Cytoskeleton | 细胞骨架 | 0.20000 | XP_057782452.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:60572472 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B99,C31,C43,D3 |
Chr1:60573484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C79 |
Chr1:60573649 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,C17,C25,C83 |
Chr1:60573699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B121,B42,B43,C16,C85 |
Chr1:60574307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:60574527 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,B32 |
Chr1:60574792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:60574821 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B17,B55 |
Chr1:60575087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782452.1PF17681
GCP_N_terminal 275-578 aa
PF04130
GCP_C_terminal 584-925 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782452.1 |
Pfam | PF17681 |
GCP_N_terminal | Domain | 275 | 578 | 2.1e-79 | 267.9 | Gamma tubulin complex component N-terminal |
XP_057782452.1 |
Pfam | PF04130 |
GCP_C_terminal | Domain | 584 | 925 | 2.3e-79 | 267.8 | Gamma tubulin complex component C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。