Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004335`

染色体: Chr01 坐标: 61471244-62277610 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004335`
名称	SmilChr01G004335
描述	H/ACA ribonucleoprotein complex subunit 4
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61471244 - 62277610 / `-`

ID 对照

NCBI Gene ID	`LOC131001622`
GeneID	`131001622`
locus_tag	`-`
NCBI Name	`LOC131001622`
原始查询	`SmilChr01G004335`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	H/ACA ribonucleoprotein complex subunit 4
产物	H/ACA ribonucleoprotein complex subunit 4
Arabidopsis	`AT3G57150` (NAP57) homologue of NAP57 [Source:NCBI gene (formerly Entrezgene);Acc:824882] identity=78.9; qcov=0.828; evalue=0; confidence=high
Rice	`Os07g0636000` (OJ1136_D11.103) - identity=79.9; qcov=0.784; evalue=0; confidence=high
GO	GO:0000495 (box H/ACA sno(s)RNA 3'-end processing); GO:0003723 (RNA binding); GO:0009982 (pseudouridine synthase activity); GO:0031118 (rRNA pseudouridine synthesis); GO:0031120 (snRNA pseudouridine synthesis); GO:0031429 (box H/ACA snoRNP complex); GO:1990481 (mRNA pseudouridine synthesis)
KEGG	smil03008 (Ribosome biogenesis in eukaryotes - Salvia miltiorrhiza (redroot sage))
Pfam	PF01472 (PUA); PF01509 (TruB_N); PF08068 (DKCLD); PF16198 (TruB_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131001622

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057784147.1`
2	Nucleolus	核仁	0.80000	`XP_057784147.1`
3	Nucleolar fibrillar center	Nucleolar fibrillar center	0.60000	`XP_057784147.1`
4	Nucleolus rim	Nucleolus rim	0.20000	`XP_057784147.1`
5	Nucleoplasm	核质	0.20000	`XP_057784147.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61471506`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,B88,C11,C69
`Chr1:61471533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C3,C50
`Chr1:61471590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr1:61471729`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr1:61471917`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:61471918`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:61472009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D7
`Chr1:61472028`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:61472133`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B84,C3,C50
`Chr1:61472199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr1:61472661`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:61472724`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057784147.1

583 aa

292

583

DKCLD

TruB_N

TruB_C_2

PUA

PF08068 DKCLD 46-103 aa PF01509 TruB_N 107-223 aa PF16198 TruB_C_2 224-290 aa PF01472 PUA 294-367 aa

XP_057784157.1

583 aa

292

583

DKCLD

TruB_N

TruB_C_2

PUA

PF08068 DKCLD 46-103 aa PF01509 TruB_N 107-223 aa PF16198 TruB_C_2 224-290 aa PF01472 PUA 294-367 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057784147.1`	Pfam	`PF08068`	DKCLD	Domain	46	103	3.7e-34	117.3	DKCLD (NUC011) domain
`XP_057784147.1`	Pfam	`PF01509`	TruB_N	Domain	107	223	3.8e-23	83.2	TruB family pseudouridylate synthase (N terminal domain)
`XP_057784147.1`	Pfam	`PF16198`	TruB_C_2	Family	224	290	2.6e-25	89.0	tRNA pseudouridylate synthase B C-terminal domain
`XP_057784147.1`	Pfam	`PF01472`	PUA	Domain	294	367	3.5e-24	85.3	PUA domain
`XP_057784157.1`	Pfam	`PF08068`	DKCLD	Domain	46	103	3.7e-34	117.3	DKCLD (NUC011) domain
`XP_057784157.1`	Pfam	`PF01509`	TruB_N	Domain	107	223	3.8e-23	83.2	TruB family pseudouridylate synthase (N terminal domain)
`XP_057784157.1`	Pfam	`PF16198`	TruB_C_2	Family	224	290	2.6e-25	89.0	tRNA pseudouridylate synthase B C-terminal domain
`XP_057784157.1`	Pfam	`PF01472`	PUA	Domain	294	367	3.5e-24	85.3	PUA domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057928174.1
TTCTTCTTCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCTTGTTCTTGTTCTTTTAGAGGCTTATATACCTTCCCATGCGCCTCATCGTAGGCTGGCCTTTCTCCACCACCCCCTTGCCCATCAAAAACCCAAAACCCTAGTCACTGCAACTTCTTCCGCCCCCTTAAAAACCCAGTTCTCCCAATTTT...

XM_057928164.1
CTTCTTCTTCTTCTTCTTTTTCTTCTTCTTGTTCTTGTTCTTCTTCTTCTTCTTTTTCTTCTTCTTAGGCTTATATACCTTCCCATGCGCCTCATCGTAGGCTGGCCTTTCTCCACCACCCCCTTGCCCATCAAAAACCCAAAACCCTAGTCACTGCAACTTCTTCCGCCCCCTTAAAAACCCAGTTCTCCCAATTTTCGTATTCCATCACTAAACCCTAATCACCCTCCGTCCCCATGGCCGACGTTCAGCTCCCCCAC...

CDS

2 records

下载 CDS FASTA

LOC131001622
ATGGCCGACGTTCAGCTCCCCCACTCCGAGAAGTCAAAGAAGAAGAAGAGCACCAAGTCCAAGGATGAAGAAGACGACTCCCCCGCCGCCGTCGATTTTCTGATAAAGCCGCAGAGCTTCACCCCCGCTATCGACACCTCTCAGTGGCCGATTCTCCTAAAAAACTATGAGAAACTCAACGTCCGTACCGGCCACTACACCCCTCTCCCCAACGGCTACTCGCCCCTGAAGCGCCCGCTGGCGGATTATATCAAATACGG...

Protein

2 records

下载 Protein FASTA

XP_057784147.1
MADVQLPHSEKSKKKKSTKSKDEEDDSPAAVDFLIKPQSFTPAIDTSQWPILLKNYEKLNVRTGHYTPLPNGYSPLKRPLADYIKYGIINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSKVPEVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVTM...

XP_057784157.1
MADVQLPHSEKSKKKKSTKSKDEEDDSPAAVDFLIKPQSFTPAIDTSQWPILLKNYEKLNVRTGHYTPLPNGYSPLKRPLADYIKYGIINLDKPSNPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSKVPEVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDADRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVTM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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