当前解析结果
SmilChr01G004579| 统一新 Gene ID | SmilChr01G004579 |
|---|---|
| 名称 | SmilChr01G004579 |
| 描述 | transcription factor MYB60 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63843623 - 63845347 / - |
| NCBI Gene ID | LOC131004568 |
|---|---|
| GeneID | 131004568 |
| locus_tag | - |
| NCBI Name | LOC131004568 |
| 原始查询 | SmilChr01G004579 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB60 |
| 产物 | transcription factor MYB60 |
| Arabidopsis | AT1G08810 (MYB60)myb domain protein 60 [Source:NCBI gene (formerly Entrezgene);Acc:837403] identity=53.1; qcov=0.99; evalue=2.72e-99; confidence=high |
| Rice | Os12g0125000 (OsMYB60)- identity=49.1; qcov=1.03; evalue=1.35e-87; confidence=high |
| GO | GO:0009733 (response to auxin) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004568 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057787263.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057787263.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057787263.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057787263.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057787263.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63844191 |
GGA |
G |
2bp_deletion | frameshift_variant | 15 | B109,B125,B13,B3,B30,B38,B39,B49,B70,B90,B92,C13,C64,C66,D5 |
Chr1:63844288 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr1:63844492 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B12,B122,D7 |
Chr1:63844704 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,C8 |
Chr1:63844713 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B127,B140,B29,B54,D11 |
Chr1:63844764 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,C8 |
Chr1:63844785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:63844801 |
A |
AGT |
2bp_insertion | frameshift_variant | 9 | B36,B67,B69,B82,C12,C23,C51,C54,C71 |
Chr1:63844895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr1:63844918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B127,B29,B54 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787263.1PF00249
Myb_DNA-binding 14-61 aa
PF13921
Myb_DNA-bind_6 17-75 aa
PF00249
Myb_DNA-binding 67-112 aa
PF13921
Myb_DNA-bind_6 70-118 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787263.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 14 | 61 | 6.6e-33 | 113.3 | Myb-like DNA-binding domain |
XP_057787263.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 17 | 75 | 4.6e-18 | 65.9 | Myb-like DNA-binding domain |
XP_057787263.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 67 | 112 | 6.6e-33 | 113.3 | Myb-like DNA-binding domain |
XP_057787263.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 70 | 118 | 4.6e-18 | 65.9 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。