当前解析结果
SmilChr01G004705| 统一新 Gene ID | SmilChr01G004705 |
|---|---|
| 名称 | SmilChr01G004705 |
| 描述 | putative receptor-like protein kinase At1g80870 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65156414 - 65159062 / - |
| NCBI Gene ID | LOC131005053 |
|---|---|
| GeneID | 131005053 |
| locus_tag | - |
| NCBI Name | LOC131005053 |
| 原始查询 | SmilChr01G004705 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative receptor-like protein kinase At1g80870 |
| 产物 | putative receptor-like protein kinase At1g80870 |
| Arabidopsis | AT1G80870 (AT1G80870)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:844427] identity=54.3; qcov=1.04; evalue=0; confidence=high |
| Rice | Os03g0251700- identity=34; qcov=0.954; evalue=1.66e-91; confidence=low |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005053 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057787828.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057787828.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057787828.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057787828.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057787828.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65156875 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B105,B25,B75,B81,D7 |
Chr1:65156990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:65157461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B103,B106,D11 |
Chr1:65157472 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr1:65157591 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
Chr1:65157728 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | C1,C16 |
Chr1:65157728 |
AC |
A |
1bp_deletion | CDS_variant | 2 | C1,C16 |
Chr1:65157729 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B83,B84,B94,C59 |
Chr1:65157740 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B117,B53,C57,D1 |
Chr1:65157980 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A5,B125,B90 |
Chr1:65158196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B123,C1 |
Chr1:65158400 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787828.1PF00069
Pkinase 80-234 aa
PF07714
PK_Tyr_Ser-Thr 82-237 aa
PF00069
Pkinase 568-683 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787828.1 |
Pfam | PF00069 |
Pkinase | Domain | 80 | 234 | 4.3e-35 | 122.1 | Protein kinase domain |
XP_057787828.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 82 | 237 | 2.5e-30 | 106.4 | Protein tyrosine and serine/threonine kinase |
XP_057787828.1 |
Pfam | PF00069 |
Pkinase | Domain | 568 | 683 | 4.3e-35 | 122.1 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。